View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_53 (Length: 276)
Name: NF17574_low_53
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 36160779 - 36160539
Alignment:
| Q |
17 |
atgaaacaaacgtatcctaaagactaagaaaaggaaactgccccttgaaatttgtcttttgctatgtcgtgaatgttaatttgcacatttcgatgctaaa |
116 |
Q |
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| T |
36160779 |
atgaaacaaacgtatcctaaagactaagaaaaggaaactgcctcttgaaatttgtcttttgctatggcgtgaatgttaatttgcgcatttcaatgctaaa |
36160680 |
T |
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| Q |
117 |
tttcataatcttttgtgctgaatccaaagtaactgacagattttttccatctctacatactcattcagttcagctggctgacagcttttgc-ttgtctct |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36160679 |
tttcataagcttttgtgctgaatccaaagtaactgacagattttttccatctc----tactcattcagttcagctggctgacagcttttgctttgtctct |
36160584 |
T |
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| Q |
216 |
aaacccttttatttaaaacctaagtaacactccttgtgaagaata |
260 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36160583 |
aaacctttttatttaaaacctaagtaacactccttgtgaagaata |
36160539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 36155051 - 36154812
Alignment:
| Q |
17 |
atgaaacaaacgtatcctaaagactaagaaaaggaaactgccccttgaaatttgtcttttgctatgtcgtgaatgttaatttgcacatttcgatgctaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||| |
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| T |
36155051 |
atgaaacaaacgtatcctaaagactaagaaaaggaaactgccccttgaaatttgtcttttacaatggcgtgaatgttaatttgcacatttcaatgctaaa |
36154952 |
T |
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| Q |
117 |
tttcataatcttttgtgctgaatccaaagtaactgacagattttttccatctctacatactcattcagttcagctggctgacagcttttgcttgtctcta |
216 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
36154951 |
tttcataagcttttgtgctgaatccaagataactgacagattttttccatct----ttactcattcagttcagttggctgatagcttttgcttgtctcta |
36154856 |
T |
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| Q |
217 |
aacccttttatttaaaacctaagtaacactccttgtgaagaata |
260 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
36154855 |
aacctttttatttaaaacctaagtaacactccttgtgaaaaata |
36154812 |
T |
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