View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17574_low_55 (Length: 264)
Name: NF17574_low_55
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_55 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 18047511 - 18047747
Alignment:
| Q |
16 |
atgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
18047511 |
atgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgcggcagcaggtt |
18047610 |
T |
|
| Q |
113 |
accagactggatatgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaagtgtgtaaccttaaatctttg |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
18047611 |
accagactggatatggaatctctcatcgctcttgactcttgagatccacaattgcaatagtttgacattactgccggaagtgtgtaaccttgtatctttg |
18047710 |
T |
|
| Q |
213 |
aagacactttgcatttctaactgcttatcattaaactg |
250 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18047711 |
aagac-ctttgcatttctaactgcttatcattaaactg |
18047747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 18033599 - 18033392
Alignment:
| Q |
29 |
ggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
125 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
18033599 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggcagcaggttaccagactggatg |
18033500 |
T |
|
| Q |
126 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaag---tgtgtaaccttaaatctttgaagacacttt |
222 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||| ||| ||||| |
|
|
| T |
18033499 |
tggaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcccgaagaaatgagtaaccttgtatctttgcagaaacttt |
18033400 |
T |
|
| Q |
223 |
gcatttct |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
18033399 |
gcatttct |
18033392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 4397815 - 4397579
Alignment:
| Q |
16 |
atgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
4397815 |
atgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgcggcagcaggtt |
4397716 |
T |
|
| Q |
113 |
accagactggatatgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaagtgtgtaaccttaaatctttg |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
4397715 |
accagactggatatggaatctctcatcgctcttgactcttgagatccacaattgcaatagtttgacattactgccggaagtgtgtaaccttgtatctttg |
4397616 |
T |
|
| Q |
213 |
aagacactttgcatttctaactgcttatcattaaactg |
250 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4397615 |
aagac-ctttgcatttctaactgcttatcattaaactg |
4397579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 4530142 - 4530353
Alignment:
| Q |
29 |
ggaagatgagatcattttacaaggcctgcagccacaccattcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggatatgt |
128 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4530142 |
ggaagatgagaagattttagaaggtctgcagccacaccattcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggataggg |
4530241 |
T |
|
| Q |
129 |
aatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaag---tgtgtaaccttaaatctttgaagacactttgca |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||| ||||||| ||| |||||||| |
|
|
| T |
4530242 |
aatctctcatcgctcttgactcttgagttccacaattgcaatggtttgacatcactgcccgaagcgatgcgtaaccttgtatctttgcagaaactttgca |
4530341 |
T |
|
| Q |
226 |
tttctaactgct |
237 |
Q |
| |
|
| | |||||||| |
|
|
| T |
4530342 |
tgtataactgct |
4530353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 4519957 - 4520114
Alignment:
| Q |
29 |
ggaagatgagatcattttacaaggcctgcagccacacca---ttcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519957 |
ggaagatgagatcattttacaaggcctgcagccacaccaccattcacttcgaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
4520056 |
T |
|
| Q |
126 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcac |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4520057 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcagtagtttgacatcac |
4520114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 4498870 - 4499097
Alignment:
| Q |
29 |
ggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
125 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
4498870 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggcagcaggttaccagactggatg |
4498969 |
T |
|
| Q |
126 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaag---tgtgtaaccttaaatctttgaagacacttt |
222 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||| ||| ||||| |
|
|
| T |
4498970 |
tggaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcccgaagaaatgagtaaccttgtatctttgcagaaacttt |
4499069 |
T |
|
| Q |
223 |
gcatttctaactgcttatcattaaactg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4499070 |
gcatttctaactgcttatcattaaactg |
4499097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University