View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_6 (Length: 554)
Name: NF17574_low_6
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 45269820 - 45270368
Alignment:
| Q |
1 |
gagataaattaccctttgacaagacttgaagataaaagggacttcaactgtcaaggaaacaaaccttcaaaacatgaagtttgtagagcaagtcaataga |
100 |
Q |
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| T |
45269820 |
gagataaattaccctttgacaagagttgaagataaaagggtcttcaactgtcaaggaaaaaaaccttcaaataatgaagattgtagagcaagtcaaaaga |
45269919 |
T |
|
| Q |
101 |
gaaaaactaattcctcctgtgaaattggaggcagtagctgtgttaatgttcggaaatttcaaagggcagccgtacatcatattgacagaaagggtaaagg |
200 |
Q |
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| T |
45269920 |
gaaaaactaactcctcctttgaaattggaagcagtagctgtgttaatgttcggaaatttcaaaaggcagccgtacatcatattgacagaaagggtaaagg |
45270019 |
T |
|
| Q |
201 |
tatgagattttgtgtcttcattgtcttgtgaatgcttcgcataagttatttgttttgttctcttcaattcatgttatcattttaaaatggcatgtacttc |
300 |
Q |
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| T |
45270020 |
tatgagattttgtgtcttcattgtcttgtgaatgcttcgcataagttatttgttttgttctcttcaattcatgttatcatttttaaatggcatgtacttc |
45270119 |
T |
|
| Q |
301 |
atgttaactctagtataaccatgtggaaaatgactgacattatttcaatccaaagatgatctatgcactcaactttattattcaactcatttttaggcga |
400 |
Q |
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| T |
45270120 |
atgttaactctagtataaccatgtggaaaatgactgacataatttgaatccaaagatgatctatgcactcaactttattattcaactcatttttaggcga |
45270219 |
T |
|
| Q |
401 |
atgtatctacacataaacaatttcacgttcagctcaatgacgttgattgaaattgactttgtctcagaattggttgtaacttaagcaagtatttgtatct |
500 |
Q |
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| T |
45270220 |
atgtatctacacataaacaatttcacgttcagctcaatgacgttgattgaaattgactttgtctcagaattggttgtaacttaagcaagaatttgtatct |
45270319 |
T |
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| Q |
501 |
tttgaatccaagagtgtattttacgctcaaatttattgttcatctcact |
549 |
Q |
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| T |
45270320 |
tttgaatccaagagtgaattttacgctcaaatttattgttcaactcact |
45270368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 16889310 - 16889496
Alignment:
| Q |
27 |
tgaagataaaagggacttcaactgtcaaggaaacaaaccttcaaaacatgaagtttgtagagcaagtcaatagagaaaaactaattcctcctgtgaaatt |
126 |
Q |
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||||| || ||||| || ||||| ||||||||| |||||| | || |||||| |||||||||||||||| |||||||| ||| || |||| |||| || |
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| T |
16889310 |
tgaagctagaagggtctacaactttcaaggaaataaacctcctaataatgaagattgtagagcaagtcaaaagagaaaagttaactcatcctttgaattt |
16889409 |
T |
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| Q |
127 |
ggaggcagtagctgtgttaatgttcggaaatttcaaagggcagccgtacatcatattgacagaaagggtaaaggtatgagattttgt |
213 |
Q |
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| T |
16889410 |
gggagtagtagttgttgtaaagttgggaaatcacaaaaggtagctgtgcatcttattgacagaaaatgcaaaggtataagattttgt |
16889496 |
T |
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