View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_60 (Length: 251)
Name: NF17574_low_60
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_60 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 16639636 - 16639886
Alignment:
| Q |
1 |
tatgtatcatcaatattcttttcgctcataaaaaacaaaactagtagcagtgaactgaacnnnnnnnnnnngagttgaaataatccatcaatatcaaggg |
100 |
Q |
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| T |
16639636 |
tatgtatcatcaatattcttttcgctcataaaaaacaaaactagtagcagtgaactgaacaaaaaaaaaaagagttgaaataatccatcaatatcaaggg |
16639735 |
T |
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| Q |
101 |
aatattctatattatttaacctagctacaccaaccacaaccacattttatacattgtataagtacttgtaattgatgggtcgttctttgaacatcagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16639736 |
aatattctatattatttaacctagctacaccaaccacaaccacattttgtacattgtataagtacttgtaattgatgggtcgttctttgaaaatcagcaa |
16639835 |
T |
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| Q |
201 |
taacccttctccttctaaagctaaagaaaggaacaagacaacaacagaagt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16639836 |
taacccttctccttctaaagctaaagaaaggaacaagacaacaacagaagt |
16639886 |
T |
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