View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_65 (Length: 249)
Name: NF17574_low_65
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_65 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 16640141 - 16639896
Alignment:
| Q |
4 |
atgtccaagaatataacctagtaatactgcaattctaaccttctagcacacaaagtacnnnnnnncttcctcttgatcttaaaacacataggcaaaaaac |
103 |
Q |
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| T |
16640141 |
atgtccaaaaaaacaacctagtaatactgcaattctaaccttctagcacacaaagtacaaaaaaacttcctcttaatcttaaaacacataggcaaaaaac |
16640042 |
T |
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| Q |
104 |
aaaacctccattgcatttcaacatccatagcttcaactttgccaccacaataaggacaacaacctgatgctttttgtcttcctaattccttctcttcttc |
203 |
Q |
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| T |
16640041 |
aaaacctccattgcatctcaacatccatagcttcaactttgccaccacaataaggacaacaacctgatgctttttgtcttcctaattccttctcttcttc |
16639942 |
T |
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| Q |
204 |
atcacaaatatacacaaaccccatttttctcctgctagatttcttc |
249 |
Q |
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| T |
16639941 |
atcacaaatatacacaaaccacatttttctcctgctagatttcttc |
16639896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 52764803 - 52764873
Alignment:
| Q |
121 |
tcaacatccatagcttcaactttgccaccacaataaggacaacaacctgatgctttttgtcttcctaattc |
191 |
Q |
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| T |
52764803 |
tcaacatccatggcttcaactttgccaccacaataaggacaagaaccaggtgcttgttgtcttcccaattc |
52764873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 52770756 - 52770881
Alignment:
| Q |
71 |
tcctcttgatcttaaaacacataggcaaaaaacaaaacctccattgcatttcaacatccatagcttcaactttgccaccacaataaggacaacaacctga |
170 |
Q |
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| T |
52770756 |
tcctcttgatctgaaagcacataggtaaaaagcagagcttggattgaacctcaacatccatggcttcaactttgccaccacagtaaggacaagaaccagg |
52770855 |
T |
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| Q |
171 |
tgctttttgtcttcctaattccttct |
196 |
Q |
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| T |
52770856 |
tgcttgttgtcttctcaattccttct |
52770881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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