View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17574_low_7 (Length: 539)
Name: NF17574_low_7
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Original strand, 5638817 - 5639322
Alignment:
| Q |
12 |
atgaataaaattgacacagaaataattgattaaaattaagtatcattaaatcaatcagnnnnnnnnnnatttgaaagaaaatcaatcatagttattaaac |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||| |
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| T |
5638817 |
atgaataaaattgacacagaaataattgattaaaattaagtatcattaaataaatcagttttttttttatttgaaagaaaatcaatcacagtttttaaac |
5638916 |
T |
|
| Q |
112 |
attcacacttcacatatattgtgtttt-----------tgcaaaatcatcaccgaagtgtgaatatttaatgtcatcaattgaacaaacatccattcata |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638917 |
attcacacttcacatatattgtgttttcaaataaatcttgcaaaatcatcaccgaagtgtgaatatttaatgtcatcaattgaacaaacatccattcata |
5639016 |
T |
|
| Q |
201 |
caattccagagcctgaatgctcttggcttaaaaatgaaaatggaagnnnnnnngataacaatggaaaagacatgaattaatgaggacaagctcaacttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5639017 |
caattccagagcctgaatgctcttggcttaaaaatgaaaatggaagaaaaaaagataacaatggaaaagacatgaattaacgaggacaagctcaacttga |
5639116 |
T |
|
| Q |
301 |
accatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaattgct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5639117 |
accatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaagtgct |
5639216 |
T |
|
| Q |
401 |
aaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagattgaaacattgtgtgctatgtt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639217 |
aaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagattgaaacattgtgtgctatgtt |
5639316 |
T |
|
| Q |
501 |
aaacat |
506 |
Q |
| |
|
|||||| |
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|
| T |
5639317 |
aaacat |
5639322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 168 - 515
Target Start/End: Original strand, 9389084 - 9389424
Alignment:
| Q |
168 |
taatgtcatcaattgaacaaacatccattcatacaattccagagcctgaatgctcttggcttaaaaatgaaaatggaagnnnnnnngataacaatggaaa |
267 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| || ||||| |||||| |
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| T |
9389084 |
taatgtcatcagttgtacaaacattcattcatacaattccagggcttgaatattcttggcttaaaaatgaaaatgaaatcaaa----ataacggtggaaa |
9389179 |
T |
|
| Q |
268 |
agacatgaattaatgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtc |
367 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||| |||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
9389180 |
agacatggattaatgaggacaagctcagcttgagccatc---atcaactacatctaaagaacgggccagacaacttgggtacttaaaggggagagttgtc |
9389276 |
T |
|
| Q |
368 |
aaaggattgtccccagagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacc |
467 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||| || ||||||||||| ||||||| |
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| T |
9389277 |
aaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgcatgtacc |
9389376 |
T |
|
| Q |
468 |
tgcattaaagattgaaac-attgtgtgctatgttaaacataataatggg |
515 |
Q |
| |
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||||||||||| |||||| |||| |||| ||| | ||||||||||||| |
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|
| T |
9389377 |
tgcattaaaga-tgaaactattgagtgccatgcaatacataataatggg |
9389424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 289 - 468
Target Start/End: Complemental strand, 19810269 - 19810089
Alignment:
| Q |
289 |
agctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgt |
388 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||| |||||||| ||||||| ||||| | ||||| || || || |
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|
| T |
19810269 |
agctcaacttgaattatcatcatcaactacagctaaaggacgggctagacagcatggctacttaaacaggagagtcgtcaacgacttgtcgtcaaagagt |
19810170 |
T |
|
| Q |
389 |
ccttgaat-tgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacct |
468 |
Q |
| |
|
|||||||| ||||| || ||||||| ||||||| |||| ||| ||||||| ||||||||||||||||| |||||||| |
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|
| T |
19810169 |
ccttgaataggctaatcctaatgtgtgtccgaggtcaagggccattggaacagtaaccgcatttccaacttacatgtacct |
19810089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 19810407 - 19810358
Alignment:
| Q |
168 |
taatgtcatcaattgaacaaacatccattcatacaattccagagcctgaa |
217 |
Q |
| |
|
|||| |||||||||| |||||||| || |||||||||||||| ||||||| |
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|
| T |
19810407 |
taatatcatcaattgtacaaacattcaatcatacaattccagggcctgaa |
19810358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 168 - 514
Target Start/End: Original strand, 31938728 - 31939071
Alignment:
| Q |
168 |
taatgtcatcaattgaacaaacatccattcatacaattccagagcctgaatgctcttggcttaaaaatgaaaatggaagnnnnnnngataacaatggaaa |
267 |
Q |
| |
|
||||||||||| || || ||||| |||||||||||||||| |||||||| |||||||||||||||||||||| || |||||| |||||| |
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|
| T |
31938728 |
taatgtcatcagctgtacgaacattcattcatacaattccatggcctgaatattcttggcttaaaaatgaaaatgaaa----tcaagataacggtggaaa |
31938823 |
T |
|
| Q |
268 |
agacatgaattaatgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtc |
367 |
Q |
| |
|
||||||| || |||||||||||||||| ||||| |||||||||||||||||| |||||| | |||| ||||||||||| ||||||||||||||| ||||| |
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|
| T |
31938824 |
agacatggatgaatgaggacaagctcagcttgagccatcatcatcaactacatctaaagaatgggctagacaacttgggtacttaaaggggagaattgtc |
31938923 |
T |
|
| Q |
368 |
aaaggattgtccccagagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacc |
467 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||| || ||||||||||| || |||| |
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|
| T |
31938924 |
aaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgaatatacc |
31939023 |
T |
|
| Q |
468 |
tgcattaaagattgaaac-attgtgtgctatgttaaacataataatgg |
514 |
Q |
| |
|
|||||||||||| ||||| |||| ||| ||| || |||||||||||| |
|
|
| T |
31939024 |
tgcattaaagatggaaactattgagtgtcatgctatacataataatgg |
31939071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 282 - 473
Target Start/End: Original strand, 13535476 - 13535667
Alignment:
| Q |
282 |
gaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtcccc |
381 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||| |||||||| ||||||||||||||||| ||||| | |
|
|
| T |
13535476 |
gaggacaagctcaacttgaatcatcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcatc |
13535575 |
T |
|
| Q |
382 |
agagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcatt |
473 |
Q |
| |
|
||| ||||| |||| || ||||| ||||||||||| |||||||| | || |||||||| ||||||||||||||||| | |||||||||| |
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|
| T |
13535576 |
agaaagtcctagaatagccaaacctaatgtgtatccaagggcaagggctaccggaacagcgaccgcatttccaacttgagtatacctgcatt |
13535667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 13535009 - 13535049
Alignment:
| Q |
168 |
taatgtcatcaattgaacaaacatccattcatacaattcca |
208 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
13535009 |
taatgtcatcaattgtacaaacattcaatcatacaattcca |
13535049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 264 - 514
Target Start/End: Original strand, 1336989 - 1337241
Alignment:
| Q |
264 |
gaaaagacatgaattaatgaggacaagctcaacttgaaccatcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagt |
363 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||| || ||||||||||||||||| |
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|
| T |
1336989 |
gaaaagacatggattaatgaggacaagatcaacttgaaccatcatcattaactacatctaaaggacgggctagacaactagggtacttaaaggggagagt |
1337088 |
T |
|
| Q |
364 |
tgtcaaaggattgtccccagagcgtccttgaattgctaaacccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatg |
463 |
Q |
| |
|
|||||||||| ||| | ||| ||||| ||||||| ||||| ||||||||||| |||||||| | |||||||||||||| || ||||||||||| ||| |
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|
| T |
1337089 |
tgtcaaaggaccgtcatcggagtgtcctagaattgccaaacctaatgtgtatccaagggcaagggcaacaggaacagcaactgcgtttccaacttgcatg |
1337188 |
T |
|
| Q |
464 |
tacctg--cattaaagattgaaacattgtgtgctatgttaaacataataatgg |
514 |
Q |
| |
|
|||||| |||||||||| ||| |||| |||| ||| || |||||||||||| |
|
|
| T |
1337189 |
tacctgcacattaaagatggaactattgagtgccatgctatacataataatgg |
1337241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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