View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_71 (Length: 233)
Name: NF17574_low_71
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18518347 - 18518573
Alignment:
| Q |
1 |
attgttgtttttgttgtgagtatcattgttagtgtttgtgtctggttttgtagagcaatgtaataagaatgattgaaacttcgtggtgagtgaatggttt |
100 |
Q |
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| T |
18518347 |
attgttgtttttgttgtgagtatcattgttagtgtttgtgtctggttttgtagagcaatgtaataagaatgattgaaacttagtggtgagtgaatggttt |
18518446 |
T |
|
| Q |
101 |
gaggagacaagagtaagagtgtttggtttatgagaacatgaccatgattgaattaaggttgatgttgggtttttaaggttgtatggtttcaatgaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18518447 |
gaggagacaagagtaagagtgtttggtttatgagaacatgaccatgattgaattaaggttgatgttgggtttttaaggttgtatggtttcaatgaaggaa |
18518546 |
T |
|
| Q |
201 |
gtgccattgatgtcaatgatgatgatg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
18518547 |
gtgccattgatgtcaatgatgatgatg |
18518573 |
T |
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