View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_74 (Length: 225)
Name: NF17574_low_74
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 24292168 - 24291961
Alignment:
| Q |
1 |
taagcttaaaacttgatgtgatcaaattctgcgaagtattttattcgcatactgttggtgattaaaattaaagaaaaacagggtgagaggaaagtaatga |
100 |
Q |
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| T |
24292168 |
taagcttaaaacttgatgtgatcaaattctgcgaagtattttattcgcatactgttggtgattaaaattaaagaaaaacagggtgagaggaaagtaatga |
24292069 |
T |
|
| Q |
101 |
taggagaaaaaaccatacatcattttttaatgttttgacgaaacaatcaatcgtgcttttgtaactagaatctcccatcattcttgacttaacctgcata |
200 |
Q |
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| T |
24292068 |
taggagaaaaaaccatacatcattttttaatgttttgacgaaacaatcaatcgtgcttttgtaactagaatctcccatcattcttgacttaacctgcata |
24291969 |
T |
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| Q |
201 |
ttcataag |
208 |
Q |
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|||||||| |
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| T |
24291968 |
ttcataag |
24291961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 5772676 - 5772766
Alignment:
| Q |
114 |
catacatcattttttaatgttttgacgaaacaatcaatcgtgcttttgtaactagaatctcccatcattcttgacttaacctgcatattca |
204 |
Q |
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| T |
5772676 |
catacatcattctttaaggttttgacaaagcaatcaagggtgcttttgtaactagaatctcccatcattctcgacttgacctgcatattca |
5772766 |
T |
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