View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17574_low_8 (Length: 531)

Name: NF17574_low_8
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17574_low_8
NF17574_low_8
[»] chr2 (17 HSPs)
chr2 (15-529)||(31361179-31361701)
chr2 (63-190)||(31387872-31387999)
chr2 (77-212)||(31308047-31308182)
chr2 (71-212)||(31418393-31418535)
chr2 (77-206)||(31324778-31324907)
chr2 (58-170)||(31256585-31256697)
chr2 (64-206)||(31293602-31293746)
chr2 (397-517)||(31293963-31294083)
chr2 (407-486)||(31388235-31388314)
chr2 (237-310)||(31293806-31293879)
chr2 (410-519)||(31418043-31418152)
chr2 (70-162)||(31375603-31375695)
chr2 (258-352)||(31308263-31308357)
chr2 (246-351)||(31256761-31256866)
chr2 (412-489)||(31308431-31308508)
chr2 (434-523)||(31256941-31257030)
chr2 (237-302)||(31375807-31375872)
[»] chr5 (1 HSPs)
chr5 (237-300)||(36214383-36214446)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 529
Target Start/End: Original strand, 31361179 - 31361701
Alignment:
Q  15 cagagagggcataaaaattatatcaaaatttggtcttctctaaacatcataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtc 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31361179 cagagaggacataaaaattatatcaaaatttggtcttctctaaacatcataaaagcttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtc 31361278  T
Q  115 atgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaacggtaaatgatgattcaaagccatggaaataaaagtag 214  Q
    || ||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||      
T  31361279 attggtagttctacagtaaaattgttcgaggaaaattgcctatatattttttaaaaacaaaatggtaaatgttgattcaaagccatggaaataaaagtga 31361378  T
Q  215 acatttaacattcggctttcataataaagtgcttacattgttcgaatctgggttagattcacaagctctggaggaatatttccagacatctgattgccaa 314  Q
    || || |||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  31361379 actttgaacatttggctttcataataaagtgcttacagtattcgaatctgggttagattcccaagctcgggaggaatatttccagacatctgattgccaa 31361478  T
Q  315 ctaactccctatatatttcaagttaaacttaggttctactagaattaatttggattgaacacatacaag--------aaggnnnnnnnngttgctaagtg 406  Q
    ||||| ||||| |  |||||| | |||||||||||||||||||| | |||||||||||||||||| |||        |||         ||||| |||||    
T  31361479 ctaacaccctacacgtttcaaataaaacttaggttctactagaactgatttggattgaacacatagaagtttatggaaagaaaaaaaaagttgccaagtg 31361578  T
Q  407 ggataatgagaaactcacaaaaattgaagagttgatatgtttccaatctccgctggtattgaaccagttacacgatttccggggagcctactgttatgat 506  Q
     ||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||    
T  31361579 agataatgagaaactcacaaaatttggagagtagatatgtttgcaatctccgctggtattgaaccagttaaacgatttccgaagagactactgttatgat 31361678  T
Q  507 taagaaacatgttattacttcaa 529  Q
    |||||||||||||||| ||||||    
T  31361679 taagaaacatgttattgcttcaa 31361701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 31387872 - 31387999
Alignment:
Q  63 ataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatata 162  Q
    |||||| |||||| |||||||||||||||||||| |||||||||| ||||||   |||||||||||||||||||| || |||||||||||||||||||||    
T  31387872 ataaaaatttgaagcttacaaatcttgcaatgtagtgagcttggcgaatgtcgcaggtagttctccagtaaaattattagaggaaaatcgcctatatata 31387971  T
Q  163 atttaaaaacaaaacggtaaatgatgat 190  Q
    |||  |||||||||| |||||| |||||    
T  31387972 attgtaaaacaaaacagtaaattatgat 31387999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 31308047 - 31308182
Alignment:
Q  77 cttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaa 176  Q
    |||||||||||| ||||||| ||||||| || ||||||   ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  31308047 cttacaaatcttccaatgtagtgagcttagctaatgtcgcaggtagttctccagtaaaattgttagaggaaaatcgcctatatatcattgaaaaacaaaa 31308146  T
Q  177 cggtaaatgatgattcaaagccatggaaataaaagt 212  Q
    | |||  | ||||||| ||| ||||||||| |||||    
T  31308147 cagtatcttatgattctaagtcatggaaatcaaagt 31308182  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 31418535 - 31418393
Alignment:
Q  71 ttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatt-taaa 169  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||   ||||||||||||||||| ||||| || |||| |||||||||||||||| ||||    
T  31418535 ttgaaacttacaactcttgcaatgtagtgagcttggcgaatgtcgcaggtagttctccagtaaatttgttagatgaaagtcgcctatatataattgtaaa 31418436  T
Q  170 aacaaaacggtaaatgatgattcaaagccatggaaataaaagt 212  Q
    || ||| | |||||| ||||||| |||| ||| |||| |||||    
T  31418435 aaaaaatctgtaaattatgattctaagcaatgaaaatcaaagt 31418393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 31324778 - 31324907
Alignment:
Q  77 cttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaa 176  Q
    ||||||||||| |||||||| ||| ||||| ||||||  | |||||||||| |||||||||||| ||||| | |  ||||||||||||| ||||||||||    
T  31324778 cttacaaatctcgcaatgtagtgaccttggacaatgttgtaggtagttctctagtaaaattgttagaggacattttcctatatataattgaaaaacaaaa 31324877  T
Q  177 cggtaaatgatgattcaaagccatggaaat 206  Q
    | |||||| ||||||| ||||||| |||||    
T  31324878 cagtaaattatgattctaagccatagaaat 31324907  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 31256585 - 31256697
Alignment:
Q  58 acatcataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctat 157  Q
    ||||||||||| |||||| |||||||||||||||||||  ||||||| |||||||||   ||||||||||| ||||||||||| ||||||| |  |||||    
T  31256585 acatcataaaaatttgaagcttacaaatcttgcaatgtggtgagctttgccaatgtcgcaggtagttctccggtaaaattgttagaggaaagtttcctat 31256684  T
Q  158 atataatttaaaa 170  Q
    |||||||| ||||    
T  31256685 atataattgaaaa 31256697  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 31293602 - 31293746
Alignment:
Q  64 taaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatat--at 161  Q
    ||||| |||||| ||||||||||  |||||||| ||||||| ||||||||    |||||||||||||||||||| || ||||| | |  |||||||  |     
T  31293602 taaaactttgaagcttacaaatcgcgcaatgtagtgagctttgccaatgtggcaggtagttctccagtaaaattattagaggacattttcctatatacac 31293701  T
Q  162 aatttaaaaacaaaacggtaaatgatgattcaaagccatggaaat 206  Q
    |||| ||||||||||| | |||| ||||||| ||||||| |||||    
T  31293702 aattgaaaaacaaaacagcaaattatgattctaagccatagaaat 31293746  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 517
Target Start/End: Original strand, 31293963 - 31294083
Alignment:
Q  397 ttgctaagtgggataatgagaaactcacaaaaattgaagagttgatatgtttccaatctccgctggtattgaaccagttacacgatttccggggagccta 496  Q
    ||||||||||||||||| || |||||||||   |   ||||| ||||| ||| |||||||| ||||||||||||| ||||  ||||| | |||||| |||    
T  31293963 ttgctaagtgggataatcagtaactcacaactgtatcagagtagatatatttgcaatctccactggtattgaacccgttaatcgattgctggggagacta 31294062  T
Q  497 ctgttatgattaagaaacatg 517  Q
    |||| || |||||||||||||    
T  31294063 ctgtgataattaagaaacatg 31294083  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 486
Target Start/End: Original strand, 31388235 - 31388314
Alignment:
Q  407 ggataatgagaaactcacaaaaattgaagagttgatatgtttccaatctccgctggtattgaaccagttacacgatttcc 486  Q
    ||||||||||||||| |||| | ||| ||||| ||||||||| |||||||| ||||||||||||| ||||  ||||||||    
T  31388235 ggataatgagaaacttacaagacttggagagtagatatgtttgcaatctccactggtattgaacccgttaatcgatttcc 31388314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 31293806 - 31293879
Alignment:
Q  237 aataaagtgcttacattgttcgaatctgggttagattcacaagctctggaggaatatttccagacatctgattg 310  Q
    |||||||| |||||| |||||||||||||||||||||  |||||||  |||||||  |||||||||| ||||||    
T  31293806 aataaagtacttacagtgttcgaatctgggttagatttccaagctcacgaggaatgattccagacatttgattg 31293879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 519
Target Start/End: Complemental strand, 31418152 - 31418043
Alignment:
Q  410 taatgagaaactcacaaaaattgaagagttgatatgtttccaatctccgctggtattgaaccagttacacgatttccggggagcctactgttatgattaa 509  Q
    ||||||||||||||||| | ||||||||  |||| |||| |||||||  ||||||||||||| ||||   |||||||| ||||   ||| | ||||||||    
T  31418152 taatgagaaactcacaagatttgaagagcagataggtttgcaatctcaactggtattgaacccgttaattgatttccgaggagagcactatgatgattaa 31418053  T
Q  510 gaaacatgtt 519  Q
    ||||||||||    
T  31418052 gaaacatgtt 31418043  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 31375603 - 31375695
Alignment:
Q  70 tttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatata 162  Q
    |||||| |||||||||||  ||||||| | ||||| |||||||||   |||||||| |||||||||||||| || |||| | |||||||||||    
T  31375603 tttgaagcttacaaatctatcaatgtagtcagctttgccaatgtcgcaggtagttcgccagtaaaattgttagatgaaatttgcctatatata 31375695  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 31308263 - 31308357
Alignment:
Q  258 gaatctgggttagattcacaagctctggaggaatatttccagacatctgattgccaactaactccctatatatttcaagttaaacttaggttcta 352  Q
    ||||||||||||||||  ||||||| ||||||||||||||| |||| |||||  |   |||||| ||||  ||||||||||||| ||| ||||||    
T  31308263 gaatctgggttagatttccaagctcaggaggaatatttccaaacatttgattttccgataactcactatccatttcaagttaaagttaagttcta 31308357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 31256761 - 31256866
Alignment:
Q  246 cttacattgttcgaatctgggttagattcacaagctctggaggaatatttccagacatctgattgccaactaactccctatatatttcaagttaaactta 345  Q
    |||||| |||||| |||||| |||||||| |||||||  ||||||||||| | ||||| |||||| |   ||| |||||||  ||||||||||||| |||    
T  31256761 cttacagtgttcgtatctggcttagattcccaagctcatgaggaatattttccgacatttgattggccgttaaatccctattcatttcaagttaaaatta 31256860  T
Q  346 ggttct 351  Q
     |||||    
T  31256861 agttct 31256866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 489
Target Start/End: Original strand, 31308431 - 31308508
Alignment:
Q  412 atgagaaactcacaaaaattgaagagttgatatgtttccaatctccgctggtattgaaccagttacacgatttccggg 489  Q
    |||||||||||||||   ||| ||||| |||| |||| |||||||| |||||||||| || |||| ||||||||||||    
T  31308431 atgagaaactcacaaggtttggagagtagataagtttgcaatctccactggtattgagcctgttaaacgatttccggg 31308508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 523
Target Start/End: Original strand, 31256941 - 31257030
Alignment:
Q  434 agagttgatatgtttccaatctccgctggtattgaaccagttacacgatttccggggagcctactgttatgattaagaaacatgttatta 523  Q
    ||||| ||||| ||| | |||||| ||||||||||||| ||||  || || | |||||| ||||||| || |||||||||||||| ||||    
T  31256941 agagtagatatatttgcgatctccactggtattgaacccgttaatcggttgctggggagactactgtgataattaagaaacatgtcatta 31257030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 31375807 - 31375872
Alignment:
Q  237 aataaagtgcttacattgttcgaatctgggttagattcacaagctctggaggaatatttccagaca 302  Q
    |||||||| |||||| | ||||||| ||| |||||| | ||||||| ||||||| |||||||||||    
T  31375807 aataaagttcttacagtcttcgaatttggcttagatacccaagctcaggaggaagatttccagaca 31375872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 36214383 - 36214446
Alignment:
Q  237 aataaagtgcttacattgttcgaatctgggttagattcacaagctctggaggaatatttccaga 300  Q
    ||||||||||||||| | || |||| |||||||||||| ||| ||| ||||||| |||||||||    
T  36214383 aataaagtgcttacactctttgaatttgggttagattcccaaactcaggaggaagatttccaga 36214446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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