View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17574_low_9 (Length: 525)
Name: NF17574_low_9
Description: NF17574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17574_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9347639 - 9347789
Alignment:
| Q |
1 |
gaattttaggaacactaagccttccaaagctcattggaaacaatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaatttggaac |
100 |
Q |
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| T |
9347639 |
gaattttaggaacactaagccttccaaagctcattggaaaccatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaaattggaac |
9347738 |
T |
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| Q |
101 |
aacattgctgaacaactacaaggaagaacatgtatgatcctacacaacata |
151 |
Q |
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| T |
9347739 |
aacattgctgaacaactacaaggaagaacaggtatgatcctacacaacata |
9347789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 391 - 509
Target Start/End: Original strand, 9356065 - 9356183
Alignment:
| Q |
391 |
gtgataatggtaattgcagggaaaagctgtagattaagatggcttaatcagctagatcctagcatcaaaagagaacctttaagtaaggaagaagaggaga |
490 |
Q |
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| T |
9356065 |
gtgataatggtaattgcagggaaaagttgtagattaaggtggcttaatcacctagatcctagcatcaaaagagaacctttaagtaaggaagaagaggaga |
9356164 |
T |
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| Q |
491 |
tgcttttgcagcttcatac |
509 |
Q |
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| T |
9356165 |
tgcttttgcagcttcatac |
9356183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 394 - 509
Target Start/End: Original strand, 9348043 - 9348158
Alignment:
| Q |
394 |
ataatggtaattgcagggaaaagctgtagattaagatggcttaatcagctagatcctagcatcaaaagagaacctttaagtaaggaagaagaggagatgc |
493 |
Q |
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| T |
9348043 |
ataatgataattgcagggaaaagttgtagattaaggtggcttaatcacctagatcctagcatcaaaagagaacctttaagtaaggaagaagaggagatgc |
9348142 |
T |
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| Q |
494 |
ttttgcagcttcatac |
509 |
Q |
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| T |
9348143 |
ttttgcagcttcatac |
9348158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 9355687 - 9355837
Alignment:
| Q |
4 |
ttttaggaacactaagccttccaaagctcattggaaacaatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaatttggaacaac |
103 |
Q |
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| T |
9355687 |
ttttaggaactctaagctttccaaagctcattggaaaccatttgaagatgataagcttaaacaacttatcgctgaccatggtgctaaagattggaacaac |
9355786 |
T |
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| Q |
104 |
attgctgaacaactacaaggaagaacatgtatgatcctacacaacataaca |
154 |
Q |
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| T |
9355787 |
attgctgaaaaactacaaggaagatcaggtttgatcctacactacctaaca |
9355837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 391 - 500
Target Start/End: Original strand, 9360613 - 9360722
Alignment:
| Q |
391 |
gtgataatggtaattgcagggaaaagctgtagattaagatggcttaatcagctagatcctagcatcaaaagagaacctttaagtaaggaagaagaggaga |
490 |
Q |
| |
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|||||||||||||||| ||||||||| || |||||||| ||| |||||||||||||||||| || || |||| | |||| ||| ||||||||||||||| |
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| T |
9360613 |
gtgataatggtaattgaagggaaaagttgcagattaaggtggtgtaatcagctagatcctagaattaatagagcagcttttagtgaggaagaagaggaga |
9360712 |
T |
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| Q |
491 |
tgcttttgca |
500 |
Q |
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| T |
9360713 |
agcttttgca |
9360722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 9360026 - 9360137
Alignment:
| Q |
31 |
tcattggaaacaatctgaagatgctaagcttaaacaacttatcgctgatcatggtgctaaaatttggaacaacattgctgaacaactacaaggaagaaca |
130 |
Q |
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| T |
9360026 |
tcattggagaccatctgaagatgctaagcttaaaaaacttgttgatgaatttggtcctcacaattggaacaacattgctgaacaaatacatggaagatca |
9360125 |
T |
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| Q |
131 |
tgtatgatccta |
142 |
Q |
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| T |
9360126 |
ggtataatccta |
9360137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 9347914 - 9347959
Alignment:
| Q |
272 |
attttcaagctgtacgtttagta-ttttttattaaaattgcataag |
316 |
Q |
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| T |
9347914 |
attttcaagcggtacgtttagtatttttttattaaaattgcataag |
9347959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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