View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17575_low_1 (Length: 530)
Name: NF17575_low_1
Description: NF17575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17575_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 281 - 518
Target Start/End: Complemental strand, 34839020 - 34838783
Alignment:
| Q |
281 |
tttagaaatttgataaatttctaaaaattgtataatgcactatcatccctgtaatgcatgtgtgcaaagtgtgcagtgtgctagctattgtgtaggctta |
380 |
Q |
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| T |
34839020 |
tttagaaatttgataaatttctaaaaattgtataatgcactatcatccctgtaatgcatgtgtgcaaagtgtgcagtgtgctagctattgtgtaggctta |
34838921 |
T |
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| Q |
381 |
ggtgtttttgctaaaactaaggtctaattgtgaaggatataataaagacannnnnnnngtttaaccctttggtttttagaggaagggaccccaataattc |
480 |
Q |
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| T |
34838920 |
ggtgtttttgctaaaactaaggtttaattgtgaaggatataataaagacattttttttgtttaaccctttggtttttagaggaagggacctcaataattt |
34838821 |
T |
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| Q |
481 |
gaattttggtcagaacatgaattgaaaatgaagttttt |
518 |
Q |
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| T |
34838820 |
gaattttggtcaaaacttgaattgaaaatgaagttttt |
34838783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 34839271 - 34839098
Alignment:
| Q |
17 |
atatgaaaatggagaaaagcaatgtgcatgatgagtgatgacaaggtgttgaggaattgagtgtatatccgagtttcttttgttaagaggaatgctatca |
116 |
Q |
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| T |
34839271 |
atatgaaaatggagaaaagcaatgtgcatgatgagtgatgacaaggtgttgaggagttgagtgcatatctgagtttcttttgctaagaggaatgctatta |
34839172 |
T |
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| Q |
117 |
acactcacnnnnnnnnnngtattgaaatatgtaccatttaattattctcatgagagatacacagaaatattcctt |
191 |
Q |
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| T |
34839171 |
acactcac-ttttcttttgtattgaaatatataccatttaattattcttatgagaagtacacagaaatattcctt |
34839098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 471
Target Start/End: Complemental strand, 34834718 - 34834687
Alignment:
| Q |
440 |
tttaaccctttggtttttagaggaagggaccc |
471 |
Q |
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| T |
34834718 |
tttaaccctttggtttttagaggaagggaccc |
34834687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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