View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17575_low_4 (Length: 236)
Name: NF17575_low_4
Description: NF17575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17575_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 17995677 - 17995899
Alignment:
| Q |
14 |
caaacatgtcaccctcacgtgaacaaatggaggagacctcctcacactccacctctctccgatctggtggccaccgtcgtccaccacctacgtccaccac |
113 |
Q |
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| T |
17995677 |
caaacatgacaccctctcgtgaaaaaacggagaagacctcctcacactccacctctctccgatctggtggccaccgccgtccaccacctacctccaccac |
17995776 |
T |
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| Q |
114 |
ccacaaacaaaaatccataaccacaaccttcagattcaggtgctcatcaatcaccgctctcctcttaaaagaaacttggatcatggttacatccatcctc |
213 |
Q |
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||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||| |
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| T |
17995777 |
ccataaacaaaaatccatacccataaccttcagattcaggtgctcatcaatcacccctctcctcttagaagaaacttggatcatggctacatccaacctc |
17995876 |
T |
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| Q |
214 |
tttctcccaatggtgtaatcatc |
236 |
Q |
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||||||||||| ||||||||||| |
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| T |
17995877 |
tttctcccaattgtgtaatcatc |
17995899 |
T |
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