View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_20 (Length: 421)
Name: NF17576_high_20
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 35364163 - 35364558
Alignment:
| Q |
8 |
cgttcaacaaacaccaatcttttgttatccctcattaaatcattcattgatcacaatgtataaccatgcatttaatgatagcaaggacgggaaatctttg |
107 |
Q |
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| T |
35364163 |
cgttcaacaaacactaatcttttgttatccctcattaaatcagtcattgatcacaatgtataaccatgcatttaatgatagcaaggacgggaaatctttg |
35364262 |
T |
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| Q |
108 |
ttgattggggttaagcaatcgcttaacctaataagctttattaataagagataagagaagtgaagagataagatatggtaacacataatagtagacatat |
207 |
Q |
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| T |
35364263 |
ttgattggggttaagcaatcgcttaacctaataagctttattaataagagataagagaagagaagagataagatatggtaacacatactagtagacatat |
35364362 |
T |
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| Q |
208 |
tgtaacttaattaatccctcagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcat |
307 |
Q |
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| T |
35364363 |
tgtaacttaattaatccctcagagaaatatctagaaaactaatagtacaatgcatgaatcaaaccatgggatccatggccagaacagtgctaagattcat |
35364462 |
T |
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| Q |
308 |
agggtacatatactcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagag |
403 |
Q |
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| T |
35364463 |
agggtacatatactcattggagccattcaagatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagag |
35364558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 221 - 400
Target Start/End: Original strand, 35376140 - 35376319
Alignment:
| Q |
221 |
atccctcagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatac |
320 |
Q |
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| T |
35376140 |
atccctgagagaaatgtctaaaaaactaatagtgcaatgcatgaatcaaactatgggatccatggcgagaacagtgcttagattcatagggtacatatac |
35376239 |
T |
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| Q |
321 |
tcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcata |
400 |
Q |
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| T |
35376240 |
tcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcccaaaatgcata |
35376319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 400
Target Start/End: Original strand, 35357627 - 35357764
Alignment:
| Q |
263 |
gaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaa |
362 |
Q |
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| T |
35357627 |
gaatcaaaccatggaatccatggcgagaacagtgctaagattcatagggttcatatacaggttggatccaatgaacatctgttggactatgattctgcta |
35357726 |
T |
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| Q |
363 |
gctttttcagatggatggattgaatcccaaaatgcata |
400 |
Q |
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| T |
35357727 |
gctttttcagatggatgaaatgcatcccaaaatgcata |
35357764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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