View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17576_high_21 (Length: 419)
Name: NF17576_high_21
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 25683031 - 25683423
Alignment:
| Q |
18 |
tttggtagatggcaaaacaatacgtacctttttcattcctcactcgtgcgtaaccgtgtgaagcatcttctttgcatgcatggatcgtgcatgactcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25683031 |
tttggtagatggcaaaacaatacgtacctttttcattcctcactcgtgcgtaaccgtgtgaagcatcttctttgcatgcatggatcgtgcatgactcatc |
25683130 |
T |
|
| Q |
118 |
tcaacaaaggcatggaaaaggaaaaattgcttttcattttctatcaatcacgaggttcttgataatagtaggttctaactccagcatatatatgtcaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25683131 |
tcaacaaaggcatggaaaaggaaaaattgcttttcattttctatcaatcacgaggttcttgataatagtaggttctaactccagcatatatatgtcaact |
25683230 |
T |
|
| Q |
218 |
ttatcatcgtgcatggtggcattggagtctctccattaattctcattcctaactactcaaaattggaggaattttgttttaaacatcaaataagaatttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25683231 |
ttatcatcgtgcatggtggcattggagtctctccattaattctcattcctaactactcaaaattggaggaattttgttttaaacatcaaataagaatttt |
25683330 |
T |
|
| Q |
318 |
aataaagaaacggagccaagtacaagggt---tagaccatcaaagagatcnnnnnnntacaaatagtactaaacctgcccaagaaaccaagaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| || || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25683331 |
aataaagaaacggagccaagtacaagggttactagaccatcaaatagttcaaaaaaatacaaatagtacaaaacctgcccaagaaaccaagaa |
25683423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University