View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_22 (Length: 411)
Name: NF17576_high_22
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 36 - 398
Target Start/End: Original strand, 25031834 - 25032199
Alignment:
| Q |
36 |
gttgtcgtaatatatctcattttaacttgttaaaaaa-gtatcaacataacatattattattattatnnnnnnntaac---tatttacaatgcacttgct |
131 |
Q |
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| T |
25031834 |
gttgtcgtaatatatctcattttaacttgttaaaaaaagcataaacataacatattattattataaaaaaaaaaaaaaaattatttacaatgcacttgct |
25031933 |
T |
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| Q |
132 |
aagtaaaataaaaagagtaatgctgtcctcagtatactttccatctattggataaatgaatgaagaaagcataaaatgaatgatgctcacacacaccatt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25031934 |
aagtaaaataaaaagagtaatgctgtcctcagtatactttccatctattggataaatgaatgaagaaagcataaaatgaatgatgctcacacacaccatt |
25032033 |
T |
|
| Q |
232 |
gcgtcacctgcaacataattttgtagcagaaagtaataataacaacaatgaatttgctcgattgtttcaagttttctgcattttgcagagatgatgcttc |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25032034 |
gcgtcacctgcaacataattttgtagcagaaagtaataataacaacaatgaatttgctcgattgtttcaag-tttctgcattttgcagagatgatgcttc |
25032132 |
T |
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| Q |
332 |
atacgtgtaccaattgtttaacacaccacgcaatgcaatgcatcgcaattagcaagagatgtttgtg |
398 |
Q |
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| T |
25032133 |
atacgtgtaccaattgtttaacacaccacgcaatgcaatgcatcgcaattagcaagagatgtttgtg |
25032199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 7843781 - 7843834
Alignment:
| Q |
20 |
ctattaagaatactccgttgt-cgtaatatatctcattttaacttgttaaaaaa |
72 |
Q |
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| T |
7843781 |
ctattaaggatactcagttgttcgtaatatatctcattttgacttgtaaaaaaa |
7843834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 3910436 - 3910468
Alignment:
| Q |
40 |
tcgtaatatatctcattttaacttgttaaaaaa |
72 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
3910436 |
tcgtaatatatctcattttaacttattaaaaaa |
3910468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 30625853 - 30625801
Alignment:
| Q |
20 |
ctattaagaatactccgttgt-cgtaatatatctcattttaacttgttaaaaa |
71 |
Q |
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|||||||| |||||||||||| || ||||||| |||||||||||||||||||| |
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| T |
30625853 |
ctattaaggatactccgttgttcgcaatatatttcattttaacttgttaaaaa |
30625801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 43538020 - 43538052
Alignment:
| Q |
40 |
tcgtaatatatctcattttaacttgttaaaaaa |
72 |
Q |
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||||||||||||||||||| ||||||||||||| |
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|
| T |
43538020 |
tcgtaatatatctcattttgacttgttaaaaaa |
43538052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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