View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_36 (Length: 359)
Name: NF17576_high_36
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 15751734 - 15751391
Alignment:
| Q |
1 |
ccttgttgatgataatgatgatgttttgcaccaacaacaattggaagataagaggaacagtactaggaaatatgttattgcttgtgctatatttgcttct |
100 |
Q |
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| T |
15751734 |
ccttgttgatgataatgatgatgttttgcaccaacaacaattggaagataagaggaacagtactaggaaatatgttattgcttgtgctatatttgcttct |
15751635 |
T |
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| Q |
101 |
ctcaacaatgttcttcttggctatggtatgctttctttgaaaagtctttgactttgttgattttttgcgttgactttgattctatttagattgttcttga |
200 |
Q |
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| T |
15751634 |
ctcaacaatgttcttcttggctatggtatgctttctttgaaaagtctttgactttgttgattttttgcgttgactttgattctatttagattgttcttga |
15751535 |
T |
|
| Q |
201 |
tgatctacaatgattttgattcatttttgcatttctagtagctaagttaataacagatctaaaataataattcatcaattgtgtatgtgttattaattat |
300 |
Q |
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| T |
15751534 |
tgatctacaatgattttgattcatttttgcatttctagtagctaagataataacagatctaaaataataactcatcaattgtgtatttgttattaattat |
15751435 |
T |
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| Q |
301 |
gggagttttattgagatgatttttacgggatttttgttttgtga |
344 |
Q |
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| T |
15751434 |
gagagttttattgagatgatttttacgggatttttgttttgtga |
15751391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 1564577 - 1564920
Alignment:
| Q |
1 |
ccttgttgatgataatgatgatgttttgcaccaacaacaattggaagataagaggaacagtactaggaaatatgttattgcttgtgctatatttgcttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1564577 |
ccttgttgatgataatgatgatgttttgcaccaacaacaattggaagataagaggaacagtactaggaaatatgttattgcttgtgctatatttgcttct |
1564676 |
T |
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| Q |
101 |
ctcaacaatgttcttcttggctatggtatgctttctttgaaaagtctttgactttgttgattttttgcgttgactttgattctatttagattgttcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1564677 |
ctcaacaatgttcttcttggctatggtatgctttctttgaaaagtctttgactttgttgattttttgcgttgactttgattctatttagattgttcttga |
1564776 |
T |
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| Q |
201 |
tgatctacaatgattttgattcatttttgcatttctagtagctaagttaataacagatctaaaataataattcatcaattgtgtatgtgttattaattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
1564777 |
tgatctacaatgattttgattcatttttgcatttctagtagctaagataataacagatctaaaataataactcatcaattgtgtatttgttattaattat |
1564876 |
T |
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| Q |
301 |
gggagttttattgagatgatttttacgggatttttgttttgtga |
344 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1564877 |
gagagttttattgagatgatttttacgggatttttgttttgtga |
1564920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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