View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_38 (Length: 348)
Name: NF17576_high_38
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 150 - 332
Target Start/End: Original strand, 37789058 - 37789240
Alignment:
| Q |
150 |
ttaaattaattttctcacaggatacctgttccaacaaaactccaggatactgcaaagaattctccataaggaaaactattcttaatattaatgtgtaaat |
249 |
Q |
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| T |
37789058 |
ttaaattaattttctcacagtatacctgttccaacaaaactccaggatactgcgaagaattctccataaggaaaactattcttaatattaatgtgtaaat |
37789157 |
T |
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| Q |
250 |
tggttttcttctatctttgtaattcaatcctttaaactcgagagaattgttttcagggcttgaaaggtgtggtaagagttgta |
332 |
Q |
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| T |
37789158 |
tggttttcttctatctttgtaattcaaacctttaaactcgagagaattgttttcagggcttgaaaggtgtggtaagagttgta |
37789240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 37788915 - 37789025
Alignment:
| Q |
7 |
attgtccataccaattgagtcaaactaacgagaacgttggatatgtattcttacaaattacatccaatcatttaatgtggtatgttacttttaatatttg |
106 |
Q |
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| T |
37788915 |
attgtccctaccaattgagtcaaactaacgaggacgttggatatgtattcttacaaattatatccaatcatttaatgtggtatgttacttttaatatttg |
37789014 |
T |
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| Q |
107 |
attaatttgcc |
117 |
Q |
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| T |
37789015 |
attaatttgcc |
37789025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 2590831 - 2590864
Alignment:
| Q |
299 |
ttttcagggcttgaaaggtgtggtaagagttgta |
332 |
Q |
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| T |
2590831 |
ttttcagggcttcaaaggtgtggtaagagttgta |
2590864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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