View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17576_high_39 (Length: 347)
Name: NF17576_high_39
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_39 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 34 - 332
Target Start/End: Complemental strand, 4344359 - 4344061
Alignment:
| Q |
34 |
tataacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaagg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4344359 |
tataacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaagg |
4344260 |
T |
|
| Q |
134 |
tatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaat |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4344259 |
tatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaat |
4344160 |
T |
|
| Q |
234 |
ctgagtttcttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccctgt |
332 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4344159 |
ctaagtttcttcatgttctcaaatgctttggtactaaaacgttgtgtactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccctgt |
4344061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 37 - 331
Target Start/End: Complemental strand, 4352635 - 4352341
Alignment:
| Q |
37 |
aacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtat |
136 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
4352635 |
aactccaaattaatacctgcatctctttccaaacaagtttgacattgctgttttctaacacaacggaaactaaatttctttgatagaagtttgaagctat |
4352536 |
T |
|
| Q |
137 |
gcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctg |
236 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4352535 |
acatgttaaaggaaatccattccagtgcagccatttcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctg |
4352436 |
T |
|
| Q |
237 |
agtttcttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccctg |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4352435 |
agtttcttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacaacttttgttccctg |
4352341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 4125069 - 4125383
Alignment:
| Q |
15 |
aactcaaaatacgaaaaaatataacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttc |
114 |
Q |
| |
|
|||||||||||| |||||| | |||| |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
4125069 |
aactcaaaatac-aaaaaacaaaactccaaagtaatacctgcatctctttccacacaagtttgacattgctattttctaactcaatggaaacaatatttc |
4125167 |
T |
|
| Q |
115 |
tttgatagaagtttgaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtac |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| | |
|
|
| T |
4125168 |
tttgatagaagtttgaaggtatgcatgttaaaggaaatccattccagtgtagccatctcaattgttttgaaagatatttaaaatctccatcaagttgtgc |
4125267 |
T |
|
| Q |
215 |
accagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttca |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||||| ||| |||||||||||||||||||| ||||||| ||| ||||||||||| ||| |
|
|
| T |
4125268 |
accagaaagttgaagcaatctgagtttcttcatcttcttaaatgcttcggtgctaaaacgttgtgcactacgtcctggcagcttcaaagtcagtccctca |
4125367 |
T |
|
| Q |
315 |
acagcttttgttccct |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4125368 |
acagcttttgttccct |
4125383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 4321665 - 4321977
Alignment:
| Q |
15 |
aactcaaaatacgaaaaaatataacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttc |
114 |
Q |
| |
|
|||||||||||| |||||| ||||| |||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
4321665 |
aactcaaaatac--aaaaat-taactccaaactaatacctgaatctctttccacacaagtttagcattgctgttttctaactcaatggaaactatatttc |
4321761 |
T |
|
| Q |
115 |
tttgatagaagtttgaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtac |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4321762 |
tttgatagaagtttgaaggtatgcatcttaaaggaaatccattccagtgcagccattttaaatttcttgaaatatatttaaaatctccatcaagttgtac |
4321861 |
T |
|
| Q |
215 |
accagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| ||||||||| ||||||||||| ||| |
|
|
| T |
4321862 |
accagaaagttgcagcaatctgagtttcttcatgttctcaaatgttttagtactaaatcgttgtgcactatgacatggcatcttcaaagtcagtccctca |
4321961 |
T |
|
| Q |
315 |
acagcttttgttccct |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4321962 |
acagcttttgttccct |
4321977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 4359833 - 4359517
Alignment:
| Q |
15 |
aactcaaaatacgaaaaaatataacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttc |
114 |
Q |
| |
|
|||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||| ||||| |
|
|
| T |
4359833 |
aactcaaaatactaaaaa-taaaactcaaaattaatacctgcatctctttccacacaagtctgatattgctgttttctaacacaatggaaactaaatttc |
4359735 |
T |
|
| Q |
115 |
tttgatagaagtttgaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtac |
214 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4359734 |
tttgatagaagtttgacggtatgcatgttaaaggaaatccattccactgcagccatctcaattttcttgaaagatgtttaaaatctccatcaagttgtac |
4359635 |
T |
|
| Q |
215 |
accagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttca |
314 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||| |||| || ||| |
|
|
| T |
4359634 |
accggaaagttgcagcaatctgagtttcttcatgttctcaaatgttttggtgctaaaacgttgtgcactacgacctggcagcttcaaactcagcccctca |
4359535 |
T |
|
| Q |
315 |
acagcttttgttccctgt |
332 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
4359534 |
acagctttagttccctgt |
4359517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 332
Target Start/End: Complemental strand, 4334906 - 4334603
Alignment:
| Q |
29 |
aaaaatataacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagttt |
128 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
4334906 |
aaaaataaaactccaaattaatacctgcatctgttgccatacaagtttgacattgctgttttctaactcaatggaaactatatttctttgacggaacttt |
4334807 |
T |
|
| Q |
129 |
gaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgca |
228 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||| | |
|
|
| T |
4334806 |
gaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttctggaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaa |
4334707 |
T |
|
| Q |
229 |
gcaatctgagtttcttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttcc |
328 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||| ||||||||| |
|
|
| T |
4334706 |
gcaatctgagtttcttcatcttcttaaatgctttggtactaaaacgttgtgcactacgacctggcagcttcaaagtcaatccctcaacagtttttgttcc |
4334607 |
T |
|
| Q |
329 |
ctgt |
332 |
Q |
| |
|
|||| |
|
|
| T |
4334606 |
ctgt |
4334603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 273
Target Start/End: Original strand, 4134524 - 4134712
Alignment:
| Q |
85 |
tgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttga |
184 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| || ||||||| || || ||| ||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4134524 |
tgttttctagctgaatggaaactaaatttctttggtaaaagtttgtgggcatcaatgttaaaggaaattcattccaacacagccatctcaaatttcttga |
4134623 |
T |
|
| Q |
185 |
aagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4134624 |
aagatatttaaaatctccatcaagttgtacaccagaaggttgaagcaatctcagtttcttcatgttctcaaatgcattggtactaaaac |
4134712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 6533484 - 6533596
Alignment:
| Q |
147 |
ggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttca |
246 |
Q |
| |
|
|||||||||| ||||| |||||||| | || |||||||||| ||||||||||||||| ||||| ||||||| |||||| ||||||||||| || |||| |
|
|
| T |
6533484 |
ggaaatccatgccagtacagccatctaagatctcttgaaagacatttaaaatctccattcagttgcacaccagcaagttgaagcaatctgagcttattca |
6533583 |
T |
|
| Q |
247 |
tgttctcaaatgc |
259 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
6533584 |
tcttcttaaatgc |
6533596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 6757576 - 6757493
Alignment:
| Q |
182 |
tgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggt |
265 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||| |||||| |||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
6757576 |
tgaaagatatttaaaatctccattaagctgtaccccaacaagttgtagcaatctgagtttattcatcttcttaaatgctttggt |
6757493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 6623264 - 6623348
Alignment:
| Q |
182 |
tgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggta |
266 |
Q |
| |
|
|||||| |||||||||||||||| ||| || || || |||||||| |||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
6623264 |
tgaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttaaatgctttggta |
6623348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 6499130 - 6499213
Alignment:
| Q |
183 |
gaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggta |
266 |
Q |
| |
|
||||| |||||||||||||||| ||| || || || |||||||| |||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
6499130 |
gaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttaaatgctttggta |
6499213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 6650247 - 6650163
Alignment:
| Q |
182 |
tgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggta |
266 |
Q |
| |
|
|||||| |||||||||||||||| ||| || || || |||||||| |||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
6650247 |
tgaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttgaatgctttggta |
6650163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 6772359 - 6772241
Alignment:
| Q |
147 |
ggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttca |
246 |
Q |
| |
|
|||||||||| ||||| ||||| || | || ||||||||| |||||| ||||||| | |||||| ||||||| || | |||||||||||||| |||| |
|
|
| T |
6772359 |
ggaaatccatgccagtacagccacctaagatctcttgaaaggtatttataatctcccttaagttgcacaccagcgaggcgaagcaatctgagtttgttca |
6772260 |
T |
|
| Q |
247 |
tgttctcaaatgctttggt |
265 |
Q |
| |
|
| |||| |||||||||||| |
|
|
| T |
6772259 |
tcttcttaaatgctttggt |
6772241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 6675222 - 6675101
Alignment:
| Q |
145 |
acggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttctt |
244 |
Q |
| |
|
|||||||||||| ||||| ||||| || | | || |||||| |||||||||||||||| ||| || || || |||||||| ||||| |||||||| || |
|
|
| T |
6675222 |
acggaaatccatgccagtacagccacctaagttctcctgaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaacctgagtttatt |
6675123 |
T |
|
| Q |
245 |
catgttctcaaatgctttggta |
266 |
Q |
| |
|
||| |||| | ||||||||||| |
|
|
| T |
6675122 |
catcttcttagatgctttggta |
6675101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 6835423 - 6835306
Alignment:
| Q |
147 |
ggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttca |
246 |
Q |
| |
|
|||||||||| ||||| | |||||| | |||||| ||||| | |||||||||||| | ||||| || |||| |||||| |||||||||||||| | || |
|
|
| T |
6835423 |
ggaaatccatgccagtacaaccatctaagatttctcgaaaggtgtttaaaatctcctttaagtttcaccccagcaagttgaagcaatctgagtttataca |
6835324 |
T |
|
| Q |
247 |
tgttctcaaatgctttgg |
264 |
Q |
| |
|
| |||| |||||| |||| |
|
|
| T |
6835323 |
tcttctgaaatgcattgg |
6835306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 6546734 - 6546818
Alignment:
| Q |
182 |
tgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggta |
266 |
Q |
| |
|
|||||| |||||||||||||||| ||| | || ||| |||| | |||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
6546734 |
tgaaaggtatttaaaatctccattaagcttcaccccaccaagtcgaagcaatctgagtttattcatcttcttaaatgctttggta |
6546818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 6714999 - 6714881
Alignment:
| Q |
147 |
ggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttca |
246 |
Q |
| |
|
|||||||||| ||||| ||||| ||| || || ||||||||||||||||||||| | ||| | || |||| ||| | |||||||||||||| |||| |
|
|
| T |
6714999 |
ggaaatccatgccagtacagccacttcagatctcctgaaagatatttaaaatctcctttaagcttcaccccagcaaggcgaagcaatctgagtttattca |
6714900 |
T |
|
| Q |
247 |
tgttctcaaatgctttggt |
265 |
Q |
| |
|
| |||| ||||| |||||| |
|
|
| T |
6714899 |
tcttcttaaatgatttggt |
6714881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 7887387 - 7887473
Alignment:
| Q |
179 |
tcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggt |
265 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| ||| |||||| || ||||| || || | ||| ||||||||||||||||| |
|
|
| T |
7887387 |
tcttgaaagatatttgtaatctccattaagttgtatgccaacaagttgaagaaatcttagcttgtccatcttctcaaatgctttggt |
7887473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 6752056 - 6751940
Alignment:
| Q |
143 |
taacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttc |
242 |
Q |
| |
|
|||||||||||||| ||| | | |||||| | |||||| ||||||| |||||||||||| | || || || | || |||||| |||||||||||||| |
|
|
| T |
6752056 |
taacggaaatccatgccaatacaaccatctaagatttctcgaaagatgtttaaaatctcctttaaatttcacccaagcaagttgaagcaatctgagttta |
6751957 |
T |
|
| Q |
243 |
ttcatgttctcaaatgc |
259 |
Q |
| |
|
| ||| |||| |||||| |
|
|
| T |
6751956 |
tacatattcttaaatgc |
6751940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 44 - 330
Target Start/End: Complemental strand, 5176214 - 5175928
Alignment:
| Q |
44 |
aattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgct |
143 |
Q |
| |
|
|||||||||||| || ||| |||||||| || |||| |||||||||||||||| |||||||||| ||||| |||||| ||| ||||||| ||||||| | |
|
|
| T |
5176214 |
aattaatacctgagtcgcttcccacacaacttcgacattgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgat |
5176115 |
T |
|
| Q |
144 |
aacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttct |
243 |
Q |
| |
|
|| |||||||||||||| |||||||||| ||||||||||||||| | |||||| ||||||||||| ||||||| |||||| ||||| |||||||||| |
|
|
| T |
5176114 |
aaaggaaatccattccaagaaagccatctcagatttcttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaacctgagtttct |
5176015 |
T |
|
| Q |
244 |
tcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccct |
330 |
Q |
| |
|
||||||||||||||||||| |||||| ||| || |||||| | ||||| ||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
5176014 |
tcatgttctcaaatgctttagtactataacatttcgcactatctcttggcaacttcaaagtcaatccctcaacagcttttgttccct |
5175928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 44 - 330
Target Start/End: Complemental strand, 5278041 - 5277755
Alignment:
| Q |
44 |
aattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgct |
143 |
Q |
| |
|
|||||||||||| || ||| |||||||| || |||| |||||||||||||||| |||||||||| ||||| |||||| ||| ||||||| ||||||| | |
|
|
| T |
5278041 |
aattaatacctgagtcgcttcccacacaacttcgacattgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgat |
5277942 |
T |
|
| Q |
144 |
aacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttct |
243 |
Q |
| |
|
|| |||||||||||||| |||||||||| ||||||||||||||| | |||||| ||||||||||| ||||||| |||||| ||||| |||||||||| |
|
|
| T |
5277941 |
aaaggaaatccattccaagaaagccatctcagatttcttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaaactgagtttct |
5277842 |
T |
|
| Q |
244 |
tcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccct |
330 |
Q |
| |
|
||||||||||||||||||| |||||| ||| || |||||| | ||||| ||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
5277841 |
tcatgttctcaaatgctttagtactataacatttcgcactatctcttggcaacttcaaagtcaatccctcaacagcttttgttccct |
5277755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 5074418 - 5074704
Alignment:
| Q |
46 |
ttaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaa |
145 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| | |||||||| |||||||||||||||||| ||||| |||||| ||| ||||||| ||||||| ||| |
|
|
| T |
5074418 |
ttaatacctgggtctttttccacacaagtttgatattgctgtttactaactcaatggaaactaaatttccttgataaaagcttgaaggaatgcatgttaa |
5074517 |
T |
|
| Q |
146 |
cggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttc |
245 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||| ||||||| ||||| | | |
|
|
| T |
5074518 |
aggaaatccattccatgaaagccatctcaaatttcttgaaagatgttcaaaatccccatcaagttgtacaccagcaagttgaagcaatcgaagtttttcc |
5074617 |
T |
|
| Q |
246 |
atgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccctgt |
332 |
Q |
| |
|
|| |||| ||||||||| |||||||||| || |||| | | ||||| ||| |||| || ||| |||||| |||||||||||||| |
|
|
| T |
5074618 |
atcttcttaaatgctttagtactaaaacattttgcattttctcttggcaacttcaaagccaatccctcaacaacttttgttccctgt |
5074704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 43 - 274
Target Start/End: Complemental strand, 5342984 - 5342753
Alignment:
| Q |
43 |
aaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgc |
142 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||| |||||| |||||||||| |
|
|
| T |
5342984 |
aaattaataccttgttctctttccacagaagtttgacactgctgttttcaaactccatggaaactaaatttccttgatcaaagtttttaggtatgcatct |
5342885 |
T |
|
| Q |
143 |
taacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttc |
242 |
Q |
| |
|
||| |||||||||||||| ||||||||| | ||||| |||||||| | ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
5342884 |
taaaggaaatccattccaacatagccatcttagttttctagaaagatagtcaaaatctccatcaagttgtacgccagaaagttgaagcaatcttagttta |
5342785 |
T |
|
| Q |
243 |
ttcatgttctcaaatgctttggtactaaaacg |
274 |
Q |
| |
|
||||| || ||||||||||| || |||||||| |
|
|
| T |
5342784 |
ttcatcttttcaaatgctttagttctaaaacg |
5342753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 47 - 330
Target Start/End: Complemental strand, 5432757 - 5432474
Alignment:
| Q |
47 |
taatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaac |
146 |
Q |
| |
|
||||||||| |||||||||||| | ||||||| | |||||||||||||| |||||||||| |||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
5432757 |
taatacctgggtctctttccacaaatctttgacattactgttttctaactcgatggaaactaaatttgcttgataaaagtttgtaggtatgcatgataac |
5432658 |
T |
|
| Q |
147 |
ggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttca |
246 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| || ||||| |||||||| || ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5432657 |
ggaaatccattccaagaaagccatctcagatttcttgaaagatgttcaaaattcccatcaagctgcacaccagcaagttcaagcaatctgagtttcttca |
5432558 |
T |
|
| Q |
247 |
tgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccct |
330 |
Q |
| |
|
| |||| |||||| |||||| ||| || ||||||| | ||||| ||| ||||||| ||| |||| |||||||||||||| |
|
|
| T |
5432557 |
tcttcttaaatgcaacagtactataacattttgcactatctcttggcaacttcaaagtcaatccctcaatagcttttgttccct |
5432474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 271
Target Start/End: Complemental strand, 5396393 - 5396182
Alignment:
| Q |
60 |
tctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattcc |
159 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| |||||||||||||||||| ||| | ||||| ||| ||||||| |||||| ||| |||||| |||||| |
|
|
| T |
5396393 |
tcttcccacacatgtttgacattgctgtttactaactcaatggaaactaaattcccctgataaaagcttgaaggaatgcattttaaaggaaatgcattcc |
5396294 |
T |
|
| Q |
160 |
agtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgc |
259 |
Q |
| |
|
| |||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| |||||| |||| ||||||||| ||||| |||| ||||| |
|
|
| T |
5396293 |
aagaaagccatctcacatttcttgaaagatattcaaaatcaccatcaagttgtaaaccagcaagttgaagcagtctgagttttttcatcttcttgaatgc |
5396194 |
T |
|
| Q |
260 |
tttggtactaaa |
271 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5396193 |
tttggtactaaa |
5396182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 5147598 - 5147828
Alignment:
| Q |
43 |
aaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgc |
142 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||| | |||| |||||||||||||||||||||| ||||| | |||| ||| ||| |||||||||| |
|
|
| T |
5147598 |
aaattaatacctgggtttctttccacagaagtttgatattgctattttctaactcaatggaaactaaatttcctagataaaagcttgtgggtatgcatgt |
5147697 |
T |
|
| Q |
143 |
taacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttc |
242 |
Q |
| |
|
|| |||||||||||||| |||||||||| |||||| |||| |||| |||||| |||||||||||||| |||| |||||| |||||||| ||| | |
|
|
| T |
5147698 |
tagaggaaatccattccaagaaagccatctcagatttctcgaaatgtattcaaaatccccatcaagttgtactccagtaagttgaagcaatctcagtctt |
5147797 |
T |
|
| Q |
243 |
ttcatgttctcaaatgctttggtactaaaac |
273 |
Q |
| |
|
|||| |||| ||||||||| |||||||||| |
|
|
| T |
5147798 |
gtcatcttcttaaatgctttagtactaaaac |
5147828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 45 - 271
Target Start/End: Original strand, 5182583 - 5182809
Alignment:
| Q |
45 |
attaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgcta |
144 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| |||||||| |||||||||||||||||| |||| |||||| || | ||||| |||||| | |
|
|
| T |
5182583 |
attaatacctggggctctttccacacaactttaacattgctgtttactaactcaatggaaactaaattttcttgataaaaactcgaaggaatgcatttca |
5182682 |
T |
|
| Q |
145 |
acggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttctt |
244 |
Q |
| |
|
| |||||||||||||| |||||| ||| ||||||||||||||||| ||| || || ||||||||||||| || |||||| |||| ||| ||||| || |
|
|
| T |
5182683 |
aaggaaatccattccaagaaagccatatcagatttcttgaaagatattcaaagtccccctcaagttgtacactagcaagttgaagcagtctaagtttttt |
5182782 |
T |
|
| Q |
245 |
catgttctcaaatgctttggtactaaa |
271 |
Q |
| |
|
||| | || ||||||||||||||||| |
|
|
| T |
5182783 |
catctccttgaatgctttggtactaaa |
5182809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 5382924 - 5382773
Alignment:
| Q |
84 |
ctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttcttg |
183 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| | ||||||||||||||| ||| ||| |||||||| ||||| || ||||| | |||| || |
|
|
| T |
5382924 |
ctgttttctaactctatggaaactaaatttctttgacaaaagtttgaaggtatgaatgataaaggaaatcctttccaacacagtcatcttagttttcctg |
5382825 |
T |
|
| Q |
184 |
aaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatct |
235 |
Q |
| |
|
||||||| || |||||||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
5382824 |
aaagatacttgaaatctccatcaagttgtactccagcaagttgaagcaatct |
5382773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 273
Target Start/End: Complemental strand, 5349580 - 5349366
Alignment:
| Q |
59 |
ctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattc |
158 |
Q |
| |
|
||||||||| | ||||||||||| ||| || |||||||| |||||||||| |||| | ||| ||||||| |||||| || ||| | |||| ||| |
|
|
| T |
5349580 |
ctctttccataaaagtttgacacggctattctctaactcgatggaaactaaattttctctataaaagtttgcaggtatatgtggtaaacaacatccgttc |
5349481 |
T |
|
| Q |
159 |
cagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatg |
258 |
Q |
| |
|
|| |||||||||| |||| |||||||||||| ||||||||||||||||| ||| |||| |||||| |||||||||||| ||||||| |||| |||| |
|
|
| T |
5349480 |
caagaaagccatctcagattttttgaaagatattcaaaatctccatcaagttttaccccagcaagttgaagcaatctgagtctcttcatcttcttgaatg |
5349381 |
T |
|
| Q |
259 |
ctttggtactaaaac |
273 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5349380 |
ctttagtactaaaac |
5349366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 276
Target Start/End: Complemental strand, 5369582 - 5369471
Alignment:
| Q |
165 |
agccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttgg |
264 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||||||||||||||| ||| |||| |||||| |||||||||||||| ||||| |||| |||||||| | |
|
|
| T |
5369582 |
agccatctcagatttctggaaagatattcaaaatctccatcaagttttaccccagcaagttggagcaatctgagtttgttcatcttcttgaatgctttag |
5369483 |
T |
|
| Q |
265 |
tactaaaacgtt |
276 |
Q |
| |
|
| |||||||||| |
|
|
| T |
5369482 |
tgctaaaacgtt |
5369471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 273
Target Start/End: Complemental strand, 5095372 - 5095158
Alignment:
| Q |
59 |
ctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattc |
158 |
Q |
| |
|
||||||||| | |||||||||| |||| || |||||||| |||||||| | ||| || || ||||||| |||||| || ||| | |||||||||| |
|
|
| T |
5095372 |
ctctttccataaaagtttgacattgctattctctaactcgatggaaaccaagcttcctttgtaaaagtttgtaggtatatgtgttaaagaaaatccattc |
5095273 |
T |
|
| Q |
159 |
cagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatg |
258 |
Q |
| |
|
|| |||||||||| |||||| |||||||||| ||||||||||||||||| || |||| |||||| |||||||||||| || |||| |||| |||| |
|
|
| T |
5095272 |
caagacagccatctcagatttctcgaaagatattcaaaatctccatcaagtttaaccccagcaagttgaagcaatctgagtctcgtcatcttcttgaatg |
5095173 |
T |
|
| Q |
259 |
ctttggtactaaaac |
273 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5095172 |
ctttagtactaaaac |
5095158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 5355348 - 5355562
Alignment:
| Q |
59 |
ctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattc |
158 |
Q |
| |
|
||||||||||| |||||||||| |||| || |||||||| |||||||||| ||||| | || | | ||||| ||||| || ||| |||||| ||||| |
|
|
| T |
5355348 |
ctctttccacataagtttgacattgctattctctaactctatggaaactaaatttcctagaaaaaggtttgttggtatatgtgttaaaggaaattcattc |
5355447 |
T |
|
| Q |
159 |
cagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatg |
258 |
Q |
| |
|
|| ||||| |||| ||||||||||||| ||| ||||| ||||||||||| ||| |||| |||| | |||||| | ||| ||||||| |||| ||||| |
|
|
| T |
5355448 |
caagacagccacctcagatttcttgaaagacattcaaaatttccatcaagttttactccagcaagtagaagcaatttcagtctcttcatcttcttaaatg |
5355547 |
T |
|
| Q |
259 |
ctttggtactaaaac |
273 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5355548 |
ctttagtactaaaac |
5355562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 5424955 - 5424742
Alignment:
| Q |
60 |
tctttccacacaagtttgacactgctgttttctaactcaatggaaactatat-ttctttgatagaagtttgaaggtatgcatgctaacggaaatccattc |
158 |
Q |
| |
|
|||||||||| ||||| |||| ||| || |||||||| |||||||||| || |||| | ||| ||||||| |||||| || ||| | | |||||||| |
|
|
| T |
5424955 |
tctttccacaaaagttggacatggctattctctaactcgatggaaactaaatgttctct-ataaaagtttgtaggtatatgtggtaaagaacatccattc |
5424857 |
T |
|
| Q |
159 |
cagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatg |
258 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||||||||||| ||||| ||| |||| |||||| |||||||||||| || |||| |||| |||| |
|
|
| T |
5424856 |
caagacagccatctcagatttctcgaaagatatttaaaatctccattaagttttaccccagcaagttgaagcaatctgagtctcgtcatcttcttgaatg |
5424757 |
T |
|
| Q |
259 |
ctttggtactaaaac |
273 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5424756 |
ctttagtactaaaac |
5424742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 273
Target Start/End: Original strand, 5067978 - 5068086
Alignment:
| Q |
165 |
agccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttgg |
264 |
Q |
| |
|
|||||| ||| |||||| |||||||||| ||||||||||||||| | ||| |||| |||||| |||||||||||| ||||||| |||| |||||||| | |
|
|
| T |
5067978 |
agccatatcagatttctcgaaagatattcaaaatctccatcaaggtttaccccagcaagttgaagcaatctgagtctcttcatcttcttgaatgctttag |
5068077 |
T |
|
| Q |
265 |
tactaaaac |
273 |
Q |
| |
|
||||||||| |
|
|
| T |
5068078 |
tactaaaac |
5068086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 278
Target Start/End: Original strand, 5690850 - 5691046
Alignment:
| Q |
82 |
tgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttct |
181 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||| ||| ||||||| ||| ||| ||| |||||||||| ||| | |||||||| |||| | |
|
|
| T |
5690850 |
tgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttt |
5690949 |
T |
|
| Q |
182 |
tgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaacgttgt |
278 |
Q |
| |
|
|||||| | | ||||| |||||||||| ||| |||| |||||| | |||||| ||||| | ||| ||||||||||||| ||| |||||| |||| |
|
|
| T |
5690950 |
tgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacattgt |
5691046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 5103742 - 5103839
Alignment:
| Q |
176 |
atttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaac |
273 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||| ||||||||||| |||| ||| ||| ||||||| |||| |||||||| |||||||||| |
|
|
| T |
5103742 |
atttctcgaaagatattcaaaatctccatcaagttttactccagaaagttgaagcagtctaagtctcttcatcttcttgaatgctttagtactaaaac |
5103839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 5260937 - 5261040
Alignment:
| Q |
170 |
tctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtacta |
269 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| |||||||||| ||| ||| |||||| ||||||||||| ||||||| || ||||||||||| |||||| |
|
|
| T |
5260937 |
tctcaaatctcttgaaacatattcaaaatccccatcaagttttacttcagcaagttgaagcaatctgagactcttcatcttttcaaatgctttagtacta |
5261036 |
T |
|
| Q |
270 |
aaac |
273 |
Q |
| |
|
|||| |
|
|
| T |
5261037 |
aaac |
5261040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 5284935 - 5285038
Alignment:
| Q |
170 |
tctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtacta |
269 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| |||||||||| ||| | | |||||| ||||||||||| ||||||| || ||||||||||| |||||| |
|
|
| T |
5284935 |
tctcaaatctcttgaaacatattcaaaatccccatcaagttttacttctgcaagttgaagcaatctgagactcttcatcttttcaaatgctttagtacta |
5285034 |
T |
|
| Q |
270 |
aaac |
273 |
Q |
| |
|
|||| |
|
|
| T |
5285035 |
aaac |
5285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 5446285 - 5446195
Alignment:
| Q |
183 |
gaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaac |
273 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||| ||| |||||| || ||||||||| ||||||| || ||||||||||| |||||||||| |
|
|
| T |
5446285 |
gaaacatattcaaaatctccatcaagttttacctcagcaagttgaagaaatctgagtctcttcatcttttcaaatgctttagtactaaaac |
5446195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 5158223 - 5158436
Alignment:
| Q |
60 |
tctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattcc |
159 |
Q |
| |
|
|||||||| | |||||||| | |||| || |||||||| |||||||||| |||| | ||| ||||||| |||||| || | | | ||||| ||||| |
|
|
| T |
5158223 |
tctttccataaaagtttgatattgctattctctaactcgatggaaactaaattttctatataaaagtttgtaggtatatgtgttgaagaaaatctattcc |
5158322 |
T |
|
| Q |
160 |
agtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgc |
259 |
Q |
| |
|
| |||||||||| | |||| |||| |||||||||||||||| |||||| || |||| |||||| |||||||| ||| ||||||| |||| ||||| |
|
|
| T |
5158323 |
aagacagccatctcagacttctcgaaatatatttaaaatctccaacaagtttgaccccagcaagttgaagcaatctaagtctcttcatcttcttgaatgc |
5158422 |
T |
|
| Q |
260 |
tttggtactaaaac |
273 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
5158423 |
tttagtactgaaac |
5158436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 5132610 - 5132785
Alignment:
| Q |
63 |
ttccacacaagtttgacactgctgttttctaactcaatggaaactata-tttctttgatagaagtttgaaggtatgcatgctaacggaaatccattccag |
161 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||| |||||||||| | ||||| | ||| || | || |||||| || ||| |||||||||||||| |
|
|
| T |
5132610 |
ttccacacacgtttgacattgctattttctaactcgatggaaactaaactttctct-ataaaaatctgtaggtatatgtgttaaaggaaatccattccaa |
5132708 |
T |
|
| Q |
162 |
tgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgag |
238 |
Q |
| |
|
| |||||| | |||||||||||| || ||||||||||||||||| ||| ||| |||||| ||||||||||| |
|
|
| T |
5132709 |
cacaaccatcttagatttcttgaaaggatttcaaaatctccatcaagttttaccccatcaagttgaagcaatctgag |
5132785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 276
Target Start/End: Original strand, 36214533 - 36214765
Alignment:
| Q |
44 |
aattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgct |
143 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| ||| ||||||| ||||||| | |
|
|
| T |
36214533 |
aattaatacctggggctcttcccacacatgtttgacattgctgttttctaactcaatggaaactaaattttcttgataaaagcttgaaggaatgcatgtt |
36214632 |
T |
|
| Q |
144 |
aacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttct |
243 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||| |||||||||| | ||| || ||||||||||||||||||| |||||| |||||||||||| | | |
|
|
| T |
36214633 |
aaaggaaaaccattccaagaaagccatctcaaattttttgaaagatactcaaagtccccatcaagttgtacaccagcaagttgaagcaatctgagtcttt |
36214732 |
T |
|
| Q |
244 |
tcatgttctcaaatgctttggtactaaaacgtt |
276 |
Q |
| |
|
|||| |||| ||||||||| |||||||| |||| |
|
|
| T |
36214733 |
tcatcttcttaaatgctttagtactaaagcgtt |
36214765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 18934542 - 18934463
Alignment:
| Q |
183 |
gaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgcttt |
262 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| |||||| | || || ||||| ||||| |||||||| |
|
|
| T |
18934542 |
gaaagatatttgtaatctccattaagttgtacaccagaaagttgaagcaatttaagcttattcatcttctcgaatgcttt |
18934463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 43 - 330
Target Start/End: Original strand, 9344 - 9631
Alignment:
| Q |
43 |
aaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgc |
142 |
Q |
| |
|
||||||||||||| ||||||||||||||| | | | | ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| |
|
|
| T |
9344 |
aaattaatacctgggtctctttccacacaaatatcattttactgttttctaactcaatggaaactaaatttctttgataaaagtttgaaggtatgaatgg |
9443 |
T |
|
| Q |
143 |
taacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttc |
242 |
Q |
| |
|
||| |||||||| ||||| |||||||| | |||||||||||||| | |||||||||||||||||||| |||| |||||| |||||||| ||| || |
|
|
| T |
9444 |
taaaggaaatcctttccaacacagccatcttagttttcttgaaagatactcgaaatctccatcaagttgtactccagcaagttgaagcaatcttagtctc |
9543 |
T |
|
| Q |
243 |
ttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacagcttttgttccct |
330 |
Q |
| |
|
| ||| |||||||||| || | |||||||| || || |||| ||||| ||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
9544 |
tccatcttctcaaatgattcagcactaaaacattttgaactagttattggcaacttcaaagctagtccctcaacagcttttgttccct |
9631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 43 - 281
Target Start/End: Complemental strand, 8877210 - 8876972
Alignment:
| Q |
43 |
aaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgc |
142 |
Q |
| |
|
||||||||||||| || |||||||||| || ||||||| |||| ||||||||||| || || || | |||| |||||| |||| | ||||||||| | |
|
|
| T |
8877210 |
aaattaatacctgaatttctttccacagaactttgacattgctattttctaactcgatagataccaaattttcttgataaaagtcggtaggtatgcaggt |
8877111 |
T |
|
| Q |
143 |
taacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttc |
242 |
Q |
| |
|
||| |||||| ||||||| || | |||||| |||| | |||||| ||| ||| | ||||||||||||||| || | |||||| |||||||||||| || |
|
|
| T |
8877110 |
taaaggaaatgcattccaagataacaatctcagatttttggaaagaaattcaaagtttccatcaagttgtacgccggcaagttgaagcaatctgagtctc |
8877011 |
T |
|
| Q |
243 |
ttcatgttctcaaatgctttggtactaaaacgttgtgca |
281 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||||| |||| |
|
|
| T |
8877010 |
ttcatcttcttaaatgctttagtactaaaacgttttgca |
8876972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 5838 - 5754
Alignment:
| Q |
182 |
tgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggta |
266 |
Q |
| |
|
|||||| |||||||||||||||| ||| || || || |||||||| |||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
5838 |
tgaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttaaatgctttggta |
5754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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