View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_46 (Length: 320)
Name: NF17576_high_46
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 74 - 305
Target Start/End: Original strand, 9582808 - 9583039
Alignment:
| Q |
74 |
taaactgtgtctcacaagcaattcattagcattctcctttt-aagtataatg---cagatgaatagtttgataaatgtatgtcacattgaactgatttta |
169 |
Q |
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| T |
9582808 |
taaactgtgtctcacaaacaattcattggcattctcctttttaaatataagaagacagatgaatagttcgataaatatatgtcacattgaactgatttta |
9582907 |
T |
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| Q |
170 |
tagcttgagcagccgatatgggaatctagtcacaagcattttcttccaactcacttcattgaaatgctgaatattttcttccactttcataagctttgaa |
269 |
Q |
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| T |
9582908 |
tagcg---gtatccaatatgggc-tctagtcacaaacattttcatccaactcacttcattgaaatgctgaatattttcttccactttcataagcttcgaa |
9583003 |
T |
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| Q |
270 |
tcagcctatattccatatctcaaagcaagaagataa |
305 |
Q |
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| T |
9583004 |
tcagcttatattccatatctcaaagcaagaagataa |
9583039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 9578426 - 9578537
Alignment:
| Q |
194 |
tctagtcacaagcattttcttccaactcacttcattgaaatgctgaatattttcttccactttcataagctttgaatcagcctatattccatatctcaaa |
293 |
Q |
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||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
9578426 |
tctagtcacaaacattgtcatccaactcacttcattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaa |
9578525 |
T |
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| Q |
294 |
gcaagaagataa |
305 |
Q |
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| T |
9578526 |
gcaagaagataa |
9578537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 9573885 - 9573963
Alignment:
| Q |
226 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcctatattccatatctcaaagcaagaagata |
304 |
Q |
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| T |
9573885 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaagata |
9573963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 9582702 - 9582762
Alignment:
| Q |
16 |
attaataaactcaaaaatgttagttttgtcaaataggaccttgctaataaattgcttgtaa |
76 |
Q |
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| T |
9582702 |
attaataaactaaaaaatgtttgttttgtcaaataggaccttgctaacaaattgcttgtaa |
9582762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 9578300 - 9578388
Alignment:
| Q |
93 |
aattcattagcattctcctttt-aagtataatgcagatgaatagtttgataaatgtatgtcac---attgaactgattttatagcttga |
177 |
Q |
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| T |
9578300 |
aattcattaacattctcctttttaagtataagacagatgaatagtttgataaatatatgtcacaatattgaactgattttatagtttga |
9578388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 9573648 - 9573741
Alignment:
| Q |
87 |
acaagcaattcattagcattctccttt--taagtataatgcagatgaatagtttgataaatgtatgtcacattgaactgattttatagcttgag |
178 |
Q |
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| T |
9573648 |
acaatcaattcattagcattctccttttgtaagaataaggcagatgaatagtttcatcgtaatatgtcacattgaactgattttataacttgag |
9573741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 48878071 - 48878147
Alignment:
| Q |
226 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcctatattccatatctcaaagcaagaaga |
302 |
Q |
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| T |
48878071 |
cattgagatgctgaatattttcttccactttcataagctttgaatcagcttatattcaatatctcaaagcaagaaga |
48878147 |
T |
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