View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_5 (Length: 631)
Name: NF17576_high_5
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 17 - 623
Target Start/End: Original strand, 28761989 - 28762595
Alignment:
| Q |
17 |
acattttttggtgcatttttcatataagtaattttgattaccctcacttgtatgttcattaaggttattatcttcaaggtgtcatgtttgggatgactta |
116 |
Q |
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| T |
28761989 |
acattttttggtgcatttttcatataagtaattttgattaccctcacttgtatgttcattaaggttattatcttcaaggtgtcatgtttgggatgactta |
28762088 |
T |
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| Q |
117 |
tcatttacattaacacatagttcattagaaatggggagatattaaaatcttacataccattatgcttcattgacaatttgccgttgtgcctttaaatttg |
216 |
Q |
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| T |
28762089 |
tcatttacattaacacatagttcattagaaatggggagatattaaaatcttacataccattatgcttcattgacaatttgccgttgtgcctttaaatttg |
28762188 |
T |
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| Q |
217 |
acgtaagtgttcttcctgaaaattgaaattcgccgctgtacttgtatctttatatattatacaatcaaggatctactatcacctcaatgtgatttgaaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762189 |
acgtaagtgttcttcctgaaaattgaaattcgccgttgtacttgtatctttatatattatacaatcaaggatctactatcacctcaatgtgatttgaaat |
28762288 |
T |
|
| Q |
317 |
tctccgttgtatcttcctgaaatttgtgtgtggctatgttcattttgtatgcatttacaggaagaagtagtttgattaaatgaaactaaccttcttactc |
416 |
Q |
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| T |
28762289 |
ttgccgttgtatcttcctgaaatttgtgtgtggctatgttcattttgtatgcatttacaggaagaagtagtttgattaaatgaaactaaccttcttactc |
28762388 |
T |
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| Q |
417 |
gcagctttagttgttttttgtcatctctctgtccattgaaattgttgagcttcattatttactggcatatcatgacttagctatgtgtcccttaagcaaa |
516 |
Q |
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| T |
28762389 |
gcagctttagttgttttttgtcatctctctgtccattgaaattgttgagcttcattatttactggcatatcatgacttagctatgtgtcccttaagcaaa |
28762488 |
T |
|
| Q |
517 |
gcatataattatgctttggcagacatcggttgaggctagtgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgatat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762489 |
gcatataattatgctttggcagacatcggttgaggctagtgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgatat |
28762588 |
T |
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| Q |
617 |
tcttcga |
623 |
Q |
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| T |
28762589 |
tcgtcga |
28762595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 615
Target Start/End: Original strand, 42798911 - 42798970
Alignment:
| Q |
556 |
tgatgctttgactgtttgagttgtgtccgactcaattggtccagtttctcaattctgata |
615 |
Q |
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| T |
42798911 |
tgatgctttgattgtttgagttgtgtctgactcagttggtccagttgctcaattctgata |
42798970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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