View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17576_high_61 (Length: 244)

Name: NF17576_high_61
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17576_high_61
NF17576_high_61
[»] chr6 (2 HSPs)
chr6 (4-229)||(6261976-6262201)
chr6 (161-229)||(20679238-20679305)
[»] chr7 (4 HSPs)
chr7 (52-152)||(36732664-36732764)
chr7 (158-229)||(36732800-36732871)
chr7 (158-202)||(6205410-6205454)
chr7 (158-202)||(6792779-6792823)
[»] chr5 (2 HSPs)
chr5 (44-156)||(41550245-41550357)
chr5 (160-227)||(41550144-41550211)
[»] chr1 (13 HSPs)
chr1 (158-228)||(5321620-5321690)
chr1 (158-228)||(37752573-37752643)
chr1 (77-162)||(37752462-37752547)
chr1 (44-155)||(5321477-5321587)
chr1 (174-229)||(30901944-30901999)
chr1 (44-114)||(30901780-30901850)
chr1 (175-229)||(9886377-9886431)
chr1 (158-219)||(33695920-33695981)
chr1 (158-202)||(7797871-7797915)
chr1 (158-202)||(8055142-8055186)
chr1 (158-202)||(28705319-28705363)
chr1 (158-202)||(46019186-46019230)
chr1 (158-202)||(49572822-49572866)
[»] chr8 (5 HSPs)
chr8 (55-126)||(29515295-29515366)
chr8 (160-227)||(29515167-29515234)
chr8 (158-198)||(11596891-11596931)
chr8 (158-202)||(24785156-24785200)
chr8 (158-202)||(35195792-35195836)
[»] scaffold0012 (1 HSPs)
scaffold0012 (158-202)||(109091-109135)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 6261976 - 6262201
Alignment:
Q  4 tggtattgaaagtccaaatccgccctttggtgtgacagtattcttcgagatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtg 103  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6261976 tggtattgaaagtccagatccgcccttgggtgtgatagtattcttcgagatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtg 6262075  T
Q  104 atgctctgcatgcagaaacgtggtgttggtatttgggtttggagctagcttggtgtgattcaaaactgcttattgacatggtttcaaataattgcaagac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262076 atgctctgcatgcagaaacgtggtgttggtatttgggtttggagctagcttggtgtgattcaaaactgcttattgacatggtttcaaataattgcaagac 6262175  T
Q  204 taatggtacgaccccttcgttgattc 229  Q
    ||||||||||||||||| ||||||||    
T  6262176 taatggtacgaccccttggttgattc 6262201  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 20679305 - 20679238
Alignment:
Q  161 attcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgattc 229  Q
    |||||||| |||| ||| |||||||| ||||||||||||||| ||| || |||| ||||| ||||||||    
T  20679305 attcaaaattgct-attaacatggttacaaataattgcaagattaacgggacgatccctttgttgattc 20679238  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 36732664 - 36732764
Alignment:
Q  52 gatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcatgcagaaacgtggtgttggtatttgggtttggagctag 151  Q
    ||||||||||| ||||| |||||   ||||||||||||||||| |||| ||||||||||||||||||||| |||| ||  ||||||||||||||||||||    
T  36732664 gatactaatgataaatggctcaaataatttgtgcgcaagattgaagtttgtgatgctctgcatgcagaaatgtggggtgtgtatttgggtttggagctag 36732763  T
Q  152 c 152  Q
    |    
T  36732764 c 36732764  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 36732800 - 36732871
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgattc 229  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||| | | |||||| ||||||||||||    
T  36732800 gtgattcaaaattgtttattaacatggttacaaataattgcaagactagttggacgaccacttcgttgattc 36732871  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 6205410 - 6205454
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  6205410 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 6205454  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 6792823 - 6792779
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  6792823 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 6792779  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 41550357 - 41550245
Alignment:
Q  44 ttcttcgagatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcatgcagaaacgtggtgttggtatttgggttt 143  Q
    ||||||| || ||||||||||| || ||||| |||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||  ||||| || ||    
T  41550357 ttcttcgggacactaatgacaagtggctcaaaggatttgtgcgcaaaattggagtttgcgatgctctgcatgcagaaatgtggggtttatatttagggtt 41550258  T
Q  144 ggagctagcttgg 156  Q
    |||||||||||||    
T  41550257 ggagctagcttgg 41550245  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 41550211 - 41550144
Alignment:
Q  160 gattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgat 227  Q
    ||||||||| ||||||||||||||||| |||| || |||| ||||||||| |||||||||||||||||    
T  41550211 gattcaaaattgcttattgacatggttacaaacaactgcaggactaatgggacgaccccttcgttgat 41550144  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 5321620 - 5321690
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgatt 228  Q
    |||| |||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  5321620 gtgactcaaaattgcttattgatatggttacaaataattgcaagactaatggaacgaccccttcgttgatt 5321690  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 37752573 - 37752643
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgatt 228  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  37752573 gtgattcaaaattgtttattgacatggttacaaataattgcaagactaatgggacgaccccttcattgatt 37752643  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 37752462 - 37752547
Alignment:
Q  77 gatttgtgcgcaagattggagttcgtgatgctctgcatgcagaaacgtggtgttggtatttgggtttggagctagcttggtgtgat 162  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||| |||| ||| |||||| ||||| |||||||||||| |||||    
T  37752462 gatttgtgcgcaagattggtgtttgtgatgctctacatgcagaaatgtggggtttgtattttggtttagagctagcttggcgtgat 37752547  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 5321477 - 5321587
Alignment:
Q  44 ttcttcgagatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcatgcagaaacgtggtgttggtatttgggttt 143  Q
    ||||||| || ||| |||||| ||| ||||| |||||||| ||||||||||||||| |||||||||| ||||||||||  ||  ||| ||| || |||||    
T  5321477 ttcttcgcgacactgatgacagatggctcaaaggatttgtacgcaagattggagtttgtgatgctcttcatgcagaaatttgaggtttgta-ttaggttt 5321575  T
Q  144 ggagctagcttg 155  Q
    ||||||||||||    
T  5321576 ggagctagcttg 5321587  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 30901944 - 30901999
Alignment:
Q  174 tattgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgattc 229  Q
    ||||||||||||| ||||||||||||||||||| || ||||||| |||||||||||    
T  30901944 tattgacatggttacaaataattgcaagactaacgggacgacccattcgttgattc 30901999  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 30901780 - 30901850
Alignment:
Q  44 ttcttcgagatactaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcat 114  Q
    ||||||| |||| ||||| |||||||||||| | ||||||| |||||||||||| | ||||||||||||||    
T  30901780 ttcttcgggatagtaatggcaaatgactcaaagaatttgtgtgcaagattggagattgtgatgctctgcat 30901850  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 9886431 - 9886377
Alignment:
Q  175 attgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgattc 229  Q
    ||||||||||||  | ||||||||||||||||||| ||||||||| |||||||||    
T  9886431 attgacatggttaaacataattgcaagactaatgggacgacccctccgttgattc 9886377  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 33695981 - 33695920
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgacccct 219  Q
    ||||||||||| ||||||||||||||||  |||| ||||||||||  ||||| || ||||||    
T  33695981 gtgattcaaaaatgcttattgacatggtaacaaaaaattgcaagatgaatgggacaacccct 33695920  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 7797871 - 7797915
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  7797871 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 7797915  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 8055186 - 8055142
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  8055186 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 8055142  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 28705319 - 28705363
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  28705319 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 28705363  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 46019230 - 46019186
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  46019230 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 46019186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 49572866 - 49572822
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  49572866 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 49572822  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 29515366 - 29515295
Alignment:
Q  55 actaatgacaaatgactcaagggatttgtgcgcaagattggagttcgtgatgctctgcatgcagaaacgtgg 126  Q
    ||||||| |||||  ||||| ||||||||| |||||||||||||| | ||||||||||||||||||| ||||    
T  29515366 actaatggcaaattgctcaaaggatttgtgtgcaagattggagtttgcgatgctctgcatgcagaaatgtgg 29515295  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 29515234 - 29515167
Alignment:
Q  160 gattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttcgttgat 227  Q
    ||||||||| ||||||||||||| |||  |||||| |||| ||||||||| |||| ||||||||||||    
T  29515234 gattcaaaattgcttattgacatagttagaaataactgcaggactaatgggacgatcccttcgttgat 29515167  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 11596931 - 11596891
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgc 198  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  11596931 gtgattcaaaattgcttattgacatggatacaaataattgc 11596891  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 24785156 - 24785200
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  24785156 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 24785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 35195836 - 35195792
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  35195836 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 35195792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 109135 - 109091
Alignment:
Q  158 gtgattcaaaactgcttattgacatggtttcaaataattgcaaga 202  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||    
T  109135 gtgattcaaaattgcttattgacatgataacaaataattgcaaga 109091  T

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