View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_74 (Length: 212)
Name: NF17576_high_74
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_74 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 4175311 - 4175465
Alignment:
| Q |
1 |
gtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctgcacaatagcccatacatttcataaatat |
100 |
Q |
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| T |
4175311 |
gtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctgcacaatagcccatacatttcataaatat |
4175410 |
T |
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| Q |
101 |
ttattgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac |
155 |
Q |
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| T |
4175411 |
ttgttgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac |
4175465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 4171340 - 4171423
Alignment:
| Q |
20 |
cagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctgcacaatagccc--atacatttcataaatatt |
101 |
Q |
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| T |
4171340 |
cagccaaagtttccaaaagtactctcctctccactgcacgcacctcttggctgcacaataccccttatgcatttcataaatatt |
4171423 |
T |
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