View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_high_76 (Length: 202)
Name: NF17576_high_76
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_high_76 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 5809308 - 5809483
Alignment:
| Q |
18 |
ataaggctataagatgtgataataagctatcatatgtacctcaccaaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaatacc |
117 |
Q |
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| T |
5809308 |
ataagcctataagatgtgataataagctatcatatgtacctcaccaaaataaagaaaatacatagacatgtcatgaaaagaaggagagaggaaaaatacc |
5809407 |
T |
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| Q |
118 |
aaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcat |
191 |
Q |
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| T |
5809408 |
aaggccaatgtttttgtcgaggcgagaattattttatccaaactaccaaatttccccaaaatctttgcaagttcat |
5809483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 37754793 - 37754914
Alignment:
| Q |
72 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
168 |
Q |
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| T |
37754793 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37754891 |
T |
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| Q |
169 |
cccaaaaatctttgcaagttcat |
191 |
Q |
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| T |
37754892 |
cccaaacatctttgcaagttcat |
37754914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 37760767 - 37760888
Alignment:
| Q |
72 |
aaaatacata-gacatgtcatgaaaagaaggagagaggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaattt |
168 |
Q |
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| T |
37760767 |
aaaatacataagacacatcatgaacataaggagag-ggaaaaataccagggccaatgtttttgtcgaggggagaattattttatccaaactaccaaattt |
37760865 |
T |
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| Q |
169 |
cccaaaaatctttgcaagttcat |
191 |
Q |
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| T |
37760866 |
cccaaacatctttgcaagttcat |
37760888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 38605875 - 38605789
Alignment:
| Q |
107 |
ggaaaaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcat |
191 |
Q |
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|||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
38605875 |
ggaaaaataccagggccaatgttcttgtcgaggggagaattattttatccaaactaccaaatttcccaaacatctctgcaagttcat |
38605789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 37738980 - 37739062
Alignment:
| Q |
111 |
aaataccaaggccaatgtttttgt--aggcgagaattattttatccaaactaccaaatttcccaaaaatctttgcaagttcat |
191 |
Q |
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|||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
37738980 |
aaataccagggccaatgtttttgtcgagggcagaattattttatccaaactaccaaatttcccaaacatctttgcaagatcat |
37739062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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