View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_1 (Length: 836)
Name: NF17576_low_1
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 397 - 819
Target Start/End: Original strand, 16607692 - 16608114
Alignment:
| Q |
397 |
gaatattacatgacccttggacccatgataactttannnnnnnnatttcaatcaaattccaagcttacattacatctagcaaatataatgaatcaaattt |
496 |
Q |
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| T |
16607692 |
gaatattacatgacccttggatccatgataactttattttttttatttcaatcaaattccaagcttacattacatctagcaaatataatgaatcaaattt |
16607791 |
T |
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| Q |
497 |
attacttcaatcatctaaatgtagtccttcagtgtaaggtacatctgtatcaggaagccaagtattccccaatgtaaaattaagcacagtgaaattccaa |
596 |
Q |
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| T |
16607792 |
attacttcaatcatctaaatgtagtccttcagtgtaaggtacatctgtatcaggaagccaagtattccccaatgtaaaattaagcacagtgaaattccaa |
16607891 |
T |
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| Q |
597 |
gcttgattaggagtcattaaattgtaaccatgccattgtaccctattatgagttatagcaccaggtccataattatcaaactcaccataaaatagtgtat |
696 |
Q |
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| T |
16607892 |
gcttgattaggagtcattaaattgtaaccatgccattgtaccctattatgagttatagcaccaggtccataattatcaaactcaccataaaatagtgtat |
16607991 |
T |
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| Q |
697 |
ctaacccaactgttccattccattctaaccatccagaaggttgaattaaatcaccaatatatgattgcaaataaacagtccttgaatacactttccatgg |
796 |
Q |
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| T |
16607992 |
ctaacccaactgttccattccattctaaccatccagaaggttgaattaaatcaccaatatatgattgcaaataaacagtccttgaatacactttccatgg |
16608091 |
T |
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| Q |
797 |
tcttcctaagtaattcttagttg |
819 |
Q |
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| T |
16608092 |
tcttcctaagtaattcttagttg |
16608114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 16607303 - 16607479
Alignment:
| Q |
10 |
gaagaatatcaagagacttggatcgttgaaagaaatcaattgctccattggaannnnnnngtatattgtaattagtgtatgatcgtcacatgtaaataag |
109 |
Q |
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| T |
16607303 |
gaagaatttcaggagacttggatcgttgaaagaaatcaattgctccattggaatttttttgtatattgtaattagtgtatga--gtcacatgtaaataag |
16607400 |
T |
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| Q |
110 |
aggtatgagattttgtatggaccatattcttcgatgaaattagtctcaaatatgt--tagtagatatatgaactaaagg |
186 |
Q |
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| T |
16607401 |
aggtatgagattttgtatggaccatattcttcgatgaaattagtctcaaatatgttatagtagatatatgaactaaagg |
16607479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 16607522 - 16607636
Alignment:
| Q |
227 |
caatggcttttcattttaacagattaataatttgtgtaaagttgaaaaggaaggtgtttacactagggaggtgtttttgttgtttaagaccttccctttt |
326 |
Q |
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| T |
16607522 |
caatggcttttcattttaacagattaataatttgtgtaaagttgaaaaggaaggtgtttacactagggaggtgtttttgttgtttaagaccttccctttt |
16607621 |
T |
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| Q |
327 |
tctattattttgttg |
341 |
Q |
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| T |
16607622 |
tctattattttgttg |
16607636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 521 - 809
Target Start/End: Complemental strand, 2576568 - 2576280
Alignment:
| Q |
521 |
tccttcagtgtaaggtacatctgtatcaggaagccaagtattccccaatgtaaaattaagcacagtgaaattccaagcttgattaggagtcattaaattg |
620 |
Q |
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| T |
2576568 |
tccttcagtgtaaggtatatctgtatcaggaagccaagtatttcccaaagtaaagttaagtactgtaaaattccaagcttgagtatcattcaaaagaaaa |
2576469 |
T |
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| Q |
621 |
taaccatgccattgtaccctattatgagttatagcaccaggtccataattatcaaactcaccataaaatagtgtatctaacccaactgttccattccatt |
720 |
Q |
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| T |
2576468 |
tgaccaggccattgtaccctattgttagttacagaaccaggtccatagttattaaattcaccatagaaaatagtgtctaatccaactgttccattccact |
2576369 |
T |
|
| Q |
721 |
ctaaccatccagaaggttgaattaaatcaccaatatatgattgcaaataaacagtccttgaatacactttccatggtcttcctaagtaa |
809 |
Q |
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| T |
2576368 |
ctaaccaaccagaaggttgaacaaaatcgccgatatatgattgcatataaactgttcttgaataaatcttccatggtctacctaagtaa |
2576280 |
T |
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