View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_12 (Length: 474)
Name: NF17576_low_12
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 3 - 450
Target Start/End: Complemental strand, 35043742 - 35043295
Alignment:
| Q |
3 |
gatgtcgaagaaaatgaaacaagcagccatgcaatttgcaaaaatgacgatgttgtggttttaagtcacatcaccgtctcaaatgaagaatctagttcac |
102 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35043742 |
gatgccgaagagaatgaaacaagcagccatgcaatttgcaaaaatgacgatgttgtggttttaagtcacgtcaccgtctcaaatgaagaatctagttcac |
35043643 |
T |
|
| Q |
103 |
agtcagagaagatcatctctgaaaaaccggcgttaccagacactgtaacacatggtggtggcaaaacaaaaagtcttctgaatggcctagtcaatggttc |
202 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043642 |
agtcagagaagatcatctctgaaaaactggcgttaccagacactgtaacacatggtggtggcaaaacaaaaagtcttctgaatggcctagtcaatggttc |
35043543 |
T |
|
| Q |
203 |
aaagacgccttcaaaaggaagcaataacaaaaaagctagttttgctggtgagatgaaaaatggttccgaatccaagactacaccggtgagaaccataatt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043542 |
aaagacgccttcaaaaggaagcaataacaaaaaagctagttttgctggtgagatgaaaaatggttccgaatccaagactacaccggtgagaaccataatt |
35043443 |
T |
|
| Q |
303 |
gtttgtgtatatatctccaaaagacctgcattcttttaagttttacccctctctttctcattgattatagtaataccttttcttttatgttgannnnnnn |
402 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043442 |
gtttgtgtatatatctccaaaagacctgcattcttttaagttttacccctctctttctcattgattatagtaataccttttcttttatgttgattttttt |
35043343 |
T |
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| Q |
403 |
ctttcttgaaaatatatttgatcatgtaattttgaacaggctctaaat |
450 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
35043342 |
ctttctcgaaaatatatttgatcaagtaattttgaacaggttctaaat |
35043295 |
T |
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