View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17576_low_13 (Length: 473)

Name: NF17576_low_13
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17576_low_13
NF17576_low_13
[»] chr5 (2 HSPs)
chr5 (18-456)||(14897241-14897682)
chr5 (381-436)||(17261800-17261855)
[»] chr6 (3 HSPs)
chr6 (382-435)||(9311928-9311981)
chr6 (401-435)||(9665320-9665354)
chr6 (390-435)||(6003387-6003432)
[»] chr1 (4 HSPs)
chr1 (406-446)||(41513636-41513676)
chr1 (382-436)||(43611433-43611487)
chr1 (406-446)||(40780512-40780552)
chr1 (399-435)||(44365963-44365999)
[»] chr4 (8 HSPs)
chr4 (381-436)||(10564462-10564517)
chr4 (405-442)||(10069109-10069146)
chr4 (382-435)||(12588838-12588891)
chr4 (401-442)||(44383451-44383492)
chr4 (401-434)||(50668351-50668384)
chr4 (399-435)||(2422695-2422731)
chr4 (380-436)||(21052553-21052609)
chr4 (395-435)||(32923241-32923281)
[»] chr7 (6 HSPs)
chr7 (399-445)||(23172400-23172446)
chr7 (381-442)||(9522915-9522976)
chr7 (382-435)||(10954911-10954964)
chr7 (391-444)||(31723411-31723464)
chr7 (374-447)||(38553816-38553889)
chr7 (400-436)||(10555359-10555395)
[»] chr3 (6 HSPs)
chr3 (405-447)||(19599159-19599201)
chr3 (385-435)||(38559897-38559947)
chr3 (399-436)||(47255768-47255805)
chr3 (379-435)||(27397607-27397663)
chr3 (402-438)||(34268602-34268638)
chr3 (379-435)||(53681872-53681928)
[»] scaffold0591 (1 HSPs)
scaffold0591 (406-435)||(4047-4076)
[»] scaffold0083 (1 HSPs)
scaffold0083 (382-447)||(45941-46006)
[»] chr8 (2 HSPs)
chr8 (401-442)||(36588111-36588152)
chr8 (405-445)||(19734315-19734355)
[»] chr2 (1 HSPs)
chr2 (221-270)||(32494349-32494398)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 14897241 - 14897682
Alignment:
Q  18 agaatgaaatttgttgccagtttgattcataagctcaactttcaatannnnnnnnn-aacttttgatgattttaaagtcacttctaaacttaaatctctt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  14897241 agaatgaaatttgttgccagtttgattcataagctcaactttcaatattttttttttaacttttgatgattttaaagtcacttctaaacttaaatctctt 14897340  T
Q  117 tcaaaaaattgtcca--gagtttacctttgaatcccataaaaaatatcaatattagagggactcgttgagctcgtcctatttaatatggattatagatta 214  Q
    |||||||| ||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14897341 tcaaaaaactgtccaaagagtttatctttgaatcccataaaaaatatcaatattagagggactcgttgagctcgtcctatttaatatggattatagatta 14897440  T
Q  215 cttgttatcttggttttagagacataatttgcgagttagattcttaaacgacattgggctttatcaaaaatacttatttatccttatgctcctcttattg 314  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14897441 cttgttatcttgattttagagacataatttgcgagttagattcttaaacgacattgggctttatcaaaaatacttatttatccttatgctcctcttattg 14897540  T
Q  315 ataatattcgttcttgagctctagatcatcccaaattacccatcttctcnnnnnnnatggtgacgtccggggttcaaacctcatatcttacatatattat 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||    
T  14897541 ataatattcgttcttgagctctagatcatcccaaattacccatcttctctttttttatgatgacgtccggggttcaaacctcatatcttacatatattat 14897640  T
Q  415 atattgttcataccaactgagcaaagtttacggaacaattac 456  Q
    ||||||| |||||||||||||||||||| |||| ||||||||    
T  14897641 atattgtccataccaactgagcaaagttcacgggacaattac 14897682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 17261855 - 17261800
Alignment:
Q  381 ccggggttcaaacctcatatcttacatatattatatattgttcataccaactgagc 436  Q
    |||||||||||||| ||||||||||||||||||| |||||| ||||||||| ||||    
T  17261855 ccggggttcaaaccccatatcttacatatattatgtattgtccataccaaccgagc 17261800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 9311928 - 9311981
Alignment:
Q  382 cggggttcaaacctcatatcttacatatattatatattgttcataccaactgag 435  Q
    |||||||  ||||||| |||||||||||||||| |||| |||||||||||||||    
T  9311928 cggggtttgaacctcaaatcttacatatattatgtattattcataccaactgag 9311981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 435
Target Start/End: Complemental strand, 9665354 - 9665320
Alignment:
Q  401 cttacatatattatatattgttcataccaactgag 435  Q
    |||||||||||||||||||||||||||||| ||||    
T  9665354 cttacatatattatatattgttcataccaattgag 9665320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 6003387 - 6003432
Alignment:
Q  390 aaacctcatatcttacatatattatatattgttcataccaactgag 435  Q
    |||||||| | || |||||||||||||||||||| |||||||||||    
T  6003387 aaacctcaaacctaacatatattatatattgttcctaccaactgag 6003432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 41513676 - 41513636
Alignment:
Q  406 atatattatatattgttcataccaactgagcaaagtttacg 446  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  41513676 atatattatatattgtccataccaactgagctaagtttacg 41513636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 43611487 - 43611433
Alignment:
Q  382 cggggttcaaacctcatatcttacatatattatatattgttcataccaactgagc 436  Q
    |||||||  |||| |||| |||||||||||||| |||||| ||||||||||||||    
T  43611487 cggggtttgaaccccataccttacatatattatgtattgtccataccaactgagc 43611433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 40780552 - 40780512
Alignment:
Q  406 atatattatatattgttcataccaactgagcaaagtttacg 446  Q
    |||||||||| |||||||||||||| ||||| |||||||||    
T  40780552 atatattatacattgttcataccaattgagctaagtttacg 40780512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 44365963 - 44365999
Alignment:
Q  399 atcttacatatattatatattgttcataccaactgag 435  Q
    |||||||||||||||| |||||||| |||||||||||    
T  44365963 atcttacatatattatgtattgttcctaccaactgag 44365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 10564462 - 10564517
Alignment:
Q  381 ccggggttcaaacctcatatcttacatatattatatattgttcataccaactgagc 436  Q
    ||||||||  ||||||| | |||||||||||||| |||||| ||||||||||||||    
T  10564462 ccggggtttgaacctcagaccttacatatattatgtattgtccataccaactgagc 10564517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Original strand, 10069109 - 10069146
Alignment:
Q  405 catatattatatattgttcataccaactgagcaaagtt 442  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  10069109 catatattatacattgttcataccaactgagctaagtt 10069146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 12588838 - 12588891
Alignment:
Q  382 cggggttcaaacctcatatcttacatatattatatattgttcataccaactgag 435  Q
    |||||||  ||||||| |||||| |||| |||| ||||||||||||||||||||    
T  12588838 cggggtttgaacctcagatcttatatattttatgtattgttcataccaactgag 12588891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 44383492 - 44383451
Alignment:
Q  401 cttacatatattatatattgttcataccaactgagcaaagtt 442  Q
    ||||||||| |||||||||||| ||||||||||||| |||||    
T  44383492 cttacatattttatatattgtttataccaactgagctaagtt 44383451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Complemental strand, 50668384 - 50668351
Alignment:
Q  401 cttacatatattatatattgttcataccaactga 434  Q
    |||||||||||||| |||||||||||||||||||    
T  50668384 cttacatatattatgtattgttcataccaactga 50668351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 2422695 - 2422731
Alignment:
Q  399 atcttacatatattatatattgttcataccaactgag 435  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  2422695 atcttacatatattatatattgtccatatcaactgag 2422731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 21052553 - 21052609
Alignment:
Q  380 tccggggttcaaacctcatatcttacatatattatatattgttcataccaactgagc 436  Q
    |||||| ||| ||||||||| ||| |||||||||| |||| | ||||||||||||||    
T  21052553 tccgggattcgaacctcataccttgcatatattatgtattatccataccaactgagc 21052609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 32923241 - 32923281
Alignment:
Q  395 tcatatcttacatatattatatattgttcataccaactgag 435  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  32923241 tcataccttacatatattatgcattgttcataccaactgag 32923281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 445
Target Start/End: Complemental strand, 23172446 - 23172400
Alignment:
Q  399 atcttacatatattatatattgttcataccaactgagcaaagtttac 445  Q
    ||||||||||||||||| ||||||| |||||||||||  ||||||||    
T  23172446 atcttacatatattatacattgttcctaccaactgagttaagtttac 23172400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 9522976 - 9522915
Alignment:
Q  381 ccggggttcaaacctcatatcttacatatattatatattgttcataccaactgagcaaagtt 442  Q
    ||||||||| |||| || | ||| ||||||||||  |||||||||||||||||||| |||||    
T  9522976 ccggggttcgaaccccaaaccttgcatatattatgcattgttcataccaactgagctaagtt 9522915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 10954911 - 10954964
Alignment:
Q  382 cggggttcaaacctcatatcttacatatattatatattgttcataccaactgag 435  Q
    ||||||||||||| || | ||||||||||||||||||| ||  |||||||||||    
T  10954911 cggggttcaaaccccagaccttacatatattatatattatttttaccaactgag 10954964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 31723411 - 31723464
Alignment:
Q  391 aacctcatatcttacatatattatatattgttcataccaactgagcaaagttta 444  Q
    ||||||| ||||| ||||||||||||||||||| || ||||||||  |||||||    
T  31723411 aacctcagatcttgcatatattatatattgttcttatcaactgagttaagttta 31723464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 38553889 - 38553816
Alignment:
Q  374 gtgacgtccggggttcaaacctcatatcttacatatattatatattgttcataccaactgagcaaagtttacgg 447  Q
    |||| ||||| ||||| |||| || | ||||||||||||||  ||||||| |||||||||||| ||||| ||||    
T  38553889 gtgatgtccgaggttcgaaccccaaaccttacatatattatgcattgttcttaccaactgagctaagttcacgg 38553816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 10555359 - 10555395
Alignment:
Q  400 tcttacatatattatatattgttcataccaactgagc 436  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  10555359 tcttgcatatattatacattgttcataccaactgagc 10555395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 19599159 - 19599201
Alignment:
Q  405 catatattatatattgttcataccaactgagcaaagtttacgg 447  Q
    ||||||||||||||||| | |||||||||||| ||||||||||    
T  19599159 catatattatatattgtccttaccaactgagctaagtttacgg 19599201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 38559897 - 38559947
Alignment:
Q  385 ggttcaaacctcatatcttacatatattatatattgttcataccaactgag 435  Q
    ||||||||||||| | |||| |||||||||  |||||||||||||||||||    
T  38559897 ggttcaaacctcagaccttatatatattatgcattgttcataccaactgag 38559947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 47255805 - 47255768
Alignment:
Q  399 atcttacatatattatatattgttcataccaactgagc 436  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  47255805 atcttgcatatattatatattgttcataccagctgagc 47255768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 27397607 - 27397663
Alignment:
Q  379 gtccggggttcaaacctcatatcttacatatattatatattgttcataccaactgag 435  Q
    ||||||||||| ||||| | | ||| ||||||||||| ||||| |||||||||||||    
T  27397607 gtccggggttcgaaccttagaccttgcatatattatacattgtccataccaactgag 27397663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 34268602 - 34268638
Alignment:
Q  402 ttacatatattatatattgttcataccaactgagcaa 438  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  34268602 ttacatatattatgtattgttcctaccaactgagcaa 34268638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 53681872 - 53681928
Alignment:
Q  379 gtccggggttcaaacctcatatcttacatatattatatattgttcataccaactgag 435  Q
    |||| |||||| ||||||| ||||| ||||||||||  ||||||| |||||||||||    
T  53681872 gtccagggttcgaacctcaaatcttgcatatattatgcattgttcttaccaactgag 53681928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 435
Target Start/End: Complemental strand, 4076 - 4047
Alignment:
Q  406 atatattatatattgttcataccaactgag 435  Q
    ||||||||||||||||||||||||||||||    
T  4076 atatattatatattgttcataccaactgag 4047  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 447
Target Start/End: Complemental strand, 46006 - 45941
Alignment:
Q  382 cggggttcaaacctcatatcttacatatattatatattgttcataccaactgagcaaagtttacgg 447  Q
    |||||||| ||||||  ||||| ||||||||||| ||| ||| |||||||||||| ||||| ||||    
T  46006 cggggttcgaacctcggatcttgcatatattatacattattcttaccaactgagctaagttcacgg 45941  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Original strand, 36588111 - 36588152
Alignment:
Q  401 cttacatatattatatattgttcataccaactgagcaaagtt 442  Q
    ||||||||||||||| ||||||| |||||||||||| |||||    
T  36588111 cttacatatattatacattgttcctaccaactgagctaagtt 36588152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 19734355 - 19734315
Alignment:
Q  405 catatattatatattgttcataccaactgagcaaagtttac 445  Q
    |||||||||| ||||||||| ||||||||||| ||||||||    
T  19734355 catatattatgtattgttcaaaccaactgagctaagtttac 19734315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 32494398 - 32494349
Alignment:
Q  221 atcttggttttagagacataatttgcgagttagattcttaaacgacattg 270  Q
    ||||| ||||||||||||| ||||| |||||| ||||| |||||||||||    
T  32494398 atcttagttttagagacatcatttgtgagttatattctcaaacgacattg 32494349  T

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