View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_15 (Length: 451)
Name: NF17576_low_15
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 38268784 - 38268453
Alignment:
| Q |
14 |
attatactatgaaatagatgctgaatgatgtgggctaaaagtcttacctgtggcagctgcagcagtaagagtagtgatatcatcatgagaacgaacattc |
113 |
Q |
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| T |
38268784 |
attatattatgaaatagatgctcaatgatgtgggctaaaagtcttacctgtggcagctgcagcagtaagagtagtgatatcatcatgagaacgaacattc |
38268685 |
T |
|
| Q |
114 |
acagctgagctgactaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaa |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38268684 |
acagctgagctgaccaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaa |
38268585 |
T |
|
| Q |
214 |
cagccacgtctgtcttggccatcttctcatccttgttttgtgttgatgaatttgctgttgctgctgcaatggcagctatagcagaagcaacagcagccac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38268584 |
cagccacgtctgtcttggccatcttctcatccttgttttgtgttgatgaatttgctgttgctgctgcaatggcagctatagcagaagcaacagcagccac |
38268485 |
T |
|
| Q |
314 |
agtaatagtagcgtgcagctgagcattttgtg |
345 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38268484 |
agtaatagtagcgtgcagctgagcattttgtg |
38268453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 38268414 - 38268366
Alignment:
| Q |
384 |
aaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaa |
432 |
Q |
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| T |
38268414 |
aaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaa |
38268366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 38307292 - 38307166
Alignment:
| Q |
136 |
caaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagccacgtctgtcttggccat |
235 |
Q |
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|||||||||||| |||||| ||||||||||| ||||||||||| |||||||| | | || || ||||| ||||||||||||| ||| || |||| ||| |
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| T |
38307292 |
caaggtggtcgcactcagcccccattgcttcagcagcctccactcattgtgcttccagtaatgttgcagctgaagcaacagccatgtcagttttgggcat |
38307193 |
T |
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| Q |
236 |
cttctcatccttgttttgtgttgatga |
262 |
Q |
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|||| |||||||| |||||||||| |
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| T |
38307192 |
tgtctcgcccttgtttggtgttgatga |
38307166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 38307347 - 38307306
Alignment:
| Q |
61 |
ctgtggcagctgcagcagtaagagtagtgatatcatcatgag |
102 |
Q |
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| T |
38307347 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
38307306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 259
Target Start/End: Complemental strand, 38312527 - 38312312
Alignment:
| Q |
50 |
aaaagtcttacctgtggcagctgcagcagtaagagtagtgatatcatcatgagaac------gaacattcacagctgagctgactaccgatgcaaggtgg |
143 |
Q |
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|||||| |||||| ||||||||| || ||||||||||| |||| |||||| ||| | |||||| |||||||||| || || || ||||||| | |
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| T |
38312527 |
aaaagtgttacctatggcagctgtagaagtaagagtagcgatacaatcatgtgaaattgaatggacattcgcagctgagctaaccacagaagcaaggttg |
38312428 |
T |
|
| Q |
144 |
tcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagccacgtctgtcttggccatcttctcat |
243 |
Q |
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| | || ||||| |||||||| ||||||||| ||||| || | | ||||| ||||||||||||||| | ||| || ||||||| | ||||| |||| |
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| T |
38312427 |
taacacttagctcacattgctttggcagcctcaacacactgcaccgtaactaatatggcagccgaagcaatatccatgtttgtcttgtctatcttttcat |
38312328 |
T |
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| Q |
244 |
ccttgttttgtgttga |
259 |
Q |
| |
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||||| || ||||||| |
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| T |
38312327 |
ccttgattggtgttga |
38312312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 340
Target Start/End: Original strand, 31707352 - 31707634
Alignment:
| Q |
58 |
tacctgtggcagctgcagcagtaagagtagtgatatcatcatgagaacgaacattcacagctgagctgactaccgatgcaaggtggtcgcgctcagctcc |
157 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || || || |||||||| || | ||||||||| |
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| T |
31707352 |
tacctgtggcagctgcagcagttagagtagtgatatcatcatgagatttgacattaacagcagaactaacaacagaagcaaggtgttctctctcagctcc |
31707451 |
T |
|
| Q |
158 |
cattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagccacgtctgtcttggccatcttctcatccttgttttgtgtt |
257 |
Q |
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||||||||| ||||| || |||||||| || |||| || || || || ||||| ||||||| || ||||| ||||| ||||||||||| || |||| |
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| T |
31707452 |
cattgcttcagcagcttcaacacattgagcagcaataagtgttgctgcagaagccacagccatatcagtcttagccattttctcatccttattaggtgta |
31707551 |
T |
|
| Q |
258 |
gatgaatttgctgttgctgctgcaatggcagctatagcagaagcaacagcagccacagtaatagtagcgtgcagctgagcatt |
340 |
Q |
| |
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| ||| |||||||||||| | || || || | ||||||||||||||||| |||| ||||| ||| || || |||||||| |
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| T |
31707552 |
gttgatgctgctgttgctgcagtgatagctgcaactgcagaagcaacagcagctacagaaatagcagcatgaagttgagcatt |
31707634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 15453162 - 15453291
Alignment:
| Q |
108 |
acattcacagctgagctgactaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccg |
207 |
Q |
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||||||||||| ||||| || ||||| ||| ||| ||||||||||| ||||| || | |||||||| |||||||| || || || | |||||||||| |
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| T |
15453162 |
acattcacagcagagctaaccaccgaatcaatgtgatcgcgctcagcccccatagccacagcagcctcaacacattgagccgccaccaatgtggcagccg |
15453261 |
T |
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| Q |
208 |
aagcaacagccacgtctgtcttggccatct |
237 |
Q |
| |
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| || || |||| ||||||||| ||||||| |
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| T |
15453262 |
acgctaccgccatgtctgtcttcgccatct |
15453291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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