View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_16 (Length: 451)
Name: NF17576_low_16
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 27 - 440
Target Start/End: Complemental strand, 31837399 - 31836987
Alignment:
| Q |
27 |
tatcaaagaaagaaaggaagagcatattaaaagtgtattttcatttgtttgatttatttgttcaggttatcaaagggcaagcagaagtgtatagatgctc |
126 |
Q |
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| T |
31837399 |
tatcaaagaaagaaaggaagagcatattaaaagtgtattttcatttgtttgatttatttgttcaggttatcaaagggcaagcagaagtgtatagatgctc |
31837300 |
T |
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| Q |
127 |
agcagaggttgaattctttggcgaggaacatccaacaattcctcctactacaaatgatgagagaatctaccaactagcgaggaaagtatctagtatgatt |
226 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31837299 |
agcagaggttga-ttctttggcgaggaacatccaacaattcctcctactacaaatgatgagagaatctaccaactagcgaggaaagtatctagtatgatt |
31837201 |
T |
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| Q |
227 |
gttggagaagagaacataaaattatcaccaatcgtcacagggagtgaagattttgcattttacttggaaaaagtgcctggctcatttttctttttaggta |
326 |
Q |
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| T |
31837200 |
gttggagaagagaacataaaattatcacccatcgtcacagggagtgaagattttgcattttacttggaaaaagtgcctggctcatttttctttttaggta |
31837101 |
T |
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| Q |
327 |
taaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgctgcaatacatgcagcatt |
426 |
Q |
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| T |
31837100 |
taaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgctgcaatacatgcagcatt |
31837001 |
T |
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| Q |
427 |
tgctctttcctatt |
440 |
Q |
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| T |
31837000 |
tgctctttcatatt |
31836987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 44 - 435
Target Start/End: Original strand, 26265688 - 26266080
Alignment:
| Q |
44 |
aagagcatattaaaagtgtattttcatttgtttga-tttatttgttcaggttatcaaagggcaagcagaagtgtatagatgctcagcagaggttgaattc |
142 |
Q |
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||||||||| |||||||| |||| |||||||||| ||| ||||| ||||||||||||||||||||| |||| |||| ||| | ||||||||||| ||| |
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| T |
26265688 |
aagagcatacaaaaagtgtgttttaatttgtttgagtttttttgtacaggttatcaaagggcaagcaaaagtacataggtgcactgcagaggttgagttc |
26265787 |
T |
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| Q |
143 |
tttggcgaggaacatccaacaattcctcctactacaaatgatgagagaatctaccaactagcgaggaaagtatctagtatgattgttggagaagagaaca |
242 |
Q |
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||||| | |||||||||||||| ||||| |||||||||||||||||||| ||||||| | || ||| ||| ||||||||||||||||||||||||| |
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| T |
26265788 |
tttggtaaagaacatccaacaatccctccaactacaaatgatgagagaatacaccaacttggaagacaagcatcaagtatgattgttggagaagagaaca |
26265887 |
T |
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| Q |
243 |
taaaattatcaccaatcgtcacagggagtgaagattttgcattttacttggaaaaagtgcctggctcatttttctttttaggtataaaaaatgaaaagag |
342 |
Q |
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| T |
26265888 |
taaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaaaagttcccggctcatttttcctcttaggtatacaaaatgagaaggt |
26265987 |
T |
|
| Q |
343 |
tggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgctgcaatacatgcagcatttgctctttc |
435 |
Q |
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|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
26265988 |
tggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttccaattggtgctgcgatacatgcagcatttgctctttc |
26266080 |
T |
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