View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_19 (Length: 432)
Name: NF17576_low_19
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 5 - 420
Target Start/End: Complemental strand, 13398461 - 13398046
Alignment:
| Q |
5 |
cagagaagaaggaaaaaagtctttacatgtctcaagccttgaacaacatttaaatgagagatttttcagagtggagatgtgttgaagcccatttcctttt |
104 |
Q |
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| T |
13398461 |
cagaaaagaaggaaaaaagtctttacatgtctcaagcgttgaacaacatttaaatgagagatttttcagagtggagatgtgttgaagcctatttcctttt |
13398362 |
T |
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| Q |
105 |
aaccgcatcatttcagtgagattagttattgtcaaagacacaagtaaagggggcagcaatttctttttcagcaaggtgttaacaatattatcacctccaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13398361 |
aaccgcatcatttcagtgagattagttattgtcaaagacacaagtaaagggggcagcaatttctttttcagcaaggtgttaacaatattatcacctccaa |
13398262 |
T |
|
| Q |
205 |
tatgtaaatcagacaagaaataaagtcttcggaaaccccattcagtcacaggtgaagctaaccccagggattcaatatgcataaattgtaacttgggagg |
304 |
Q |
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| T |
13398261 |
tatgtaaatcagacaagaaacaaaggctttggaaaccccattcagtcacaggtgtagctaaccccagggattcaatatgcataaattgtaacttgggagg |
13398162 |
T |
|
| Q |
305 |
gagacaagctacttcgcaacacaacgataacttgtctagagtcaagcttttaagaacaaagagagtgtccatccgttgtggcagtgatctaacggattta |
404 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13398161 |
gagacaagctacttcgcaacataacgataacttgtctagagtcaagcttttaagaacaaagagagtgtccatccgttgtggcagtgatctaagggattta |
13398062 |
T |
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| Q |
405 |
cagttactgaccttga |
420 |
Q |
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| T |
13398061 |
cagttactgaccttga |
13398046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 10955511 - 10955598
Alignment:
| Q |
112 |
tcatttcagtgagattagttattgtcaaagacacaagtaaagggggcagcaatttctttttcagcaaggtgttaacaatattatcacc |
199 |
Q |
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| T |
10955511 |
tcatttcagggagattagctattgtcagagacacaaggaaaatgggcagcaactgctctttcaataaggtgtgaacaatattatcacc |
10955598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 396
Target Start/End: Complemental strand, 828835 - 828474
Alignment:
| Q |
35 |
ctcaagccttgaacaacatttaaatgagagatttttcagagtggagatgtgttgaagcccatttccttttaaccgcatcatttcagtgagattagttatt |
134 |
Q |
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|||||||||||||||||| | || | |||||||||| || ||||||| ||||||| ||||||||| || ||||||||| ||||||| ||||| |
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| T |
828835 |
ctcaagccttgaacaacactgaattttaagatttttcatagaggagatgagttgaagttcatttccttcaaaggatttcatttcagagagattacttatt |
828736 |
T |
|
| Q |
135 |
gtcaaagacacaagtaaagggggcagcaatttctttttcagcaaggtgttaacaatattatcacctccaatatgtaaatcagaca-agaaataaagtctt |
233 |
Q |
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| T |
828735 |
gtcagagacacgaggaaaatgggaagcaacttctccttcaacaaggtgttaacgttatcatcgccctcaatatgcagatcagacagagccataaggtttt |
828636 |
T |
|
| Q |
234 |
cggaaaccccattcagtcacaggtgaagctaaccccagggattcaatatgcataaattgtaacttgggagggagacaagctacttcgcaacacaacgata |
333 |
Q |
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||| ||| | ||||||| ||||| || || | |||||||||||||| ||||| ||||| | |||||||||||||||||||| ||||| ||| || |
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| T |
828635 |
-ggaggcccgaatcagtcaaaggtggagttattcttagggattcaatatgaataaactgtaaatgcggagggagacaagctacttcacaacaggacggta |
828537 |
T |
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| Q |
334 |
acttgtctagagtcaagcttttaagaacaaagagagtgtccatccgttgtggcagtgatctaa |
396 |
Q |
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| || |||||||| |||| |||| ||| ||| |||||||||||| | |||| |||||||| |
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| T |
828536 |
aactggtgagagtcaaactttcaagagcaatgagggtgtccatccgtcgaggcaatgatctaa |
828474 |
T |
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