View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_2 (Length: 775)
Name: NF17576_low_2
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 51 - 758
Target Start/End: Complemental strand, 3298574 - 3297867
Alignment:
| Q |
51 |
ctatcacatatttactaaccgttccaagaacatctcttttataaaagttacagacaatcatttacaaagaatattatctttactatgaactgaagcctta |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3298574 |
ctatcacatatttactaaccgttccaagaacatctcttttataaaagttacagacaatcatttacaaagaatattatctttactatgaactgaagcttta |
3298475 |
T |
|
| Q |
151 |
tcaagttattgtatataggataattattttgtaatattaacttatttagataaagaaacgttagttttggtcggaaaaaagaaagatagagtcattagtt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3298474 |
tcaagttattgtatataggataattattttgtaatattaacttattttgataaagaaacgttagttttggtcggaaaaaagaaagatagaatcattagtt |
3298375 |
T |
|
| Q |
251 |
ataagtataaataaagtgtgtttaatattttattctaaattagttaatttatgtaacgaaaagaaaccattgtnnnnnnnntaagtccaacatttgtgac |
350 |
Q |
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| T |
3298374 |
a--agtataaataaagtgtgtttaatattttattctaaattagttaatttatgcaacgaaaagaaatcgttgtaaaaaaaataagtccaacatttgtgac |
3298277 |
T |
|
| Q |
351 |
tgaaataacgatcaaatagaaaatatatttaaagacaaccaaaatagcgaataataa--gcggtctccatttcgatcgctaaataaattagtgaccaatt |
448 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
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| T |
3298276 |
tgaaataacgatcaaatataaaatatatttaaagacaactaaaatagcgaataataattgtgatctccatttcgatcgctaaataaattagtgaccaatt |
3298177 |
T |
|
| Q |
449 |
tttatgctttagtgatcaaaatttgagtaacttaagatgaggatttaagtagtgtcaatannnnnnngaaaaaattctaggctgaattgactataatcac |
548 |
Q |
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| T |
3298176 |
tttatgctttagtgatctaaatttgagtaacttaagatgaggatttaagtagtgtcaatatttttttgaaaaaattctaggctgaattgactataatcac |
3298077 |
T |
|
| Q |
549 |
accatacattgttggaaagaggattctttgcggtgtctttttccctgcattcacacattcaagtcataattggccgtctgattaaaagagcgagctcaaa |
648 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3298076 |
accatgcattgttggaaagaggattccttgcggtgtctttttccctgcatttacacattcaattcataattggccgtctgattaaaagagcgagctcaaa |
3297977 |
T |
|
| Q |
649 |
ttaagactgcttgattttgatcgaagatcactgaaacatgactgcgtggttttgttgaacgcagtgaatcgtggtccgtattatcattgatcctcccata |
748 |
Q |
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||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||| ||||| ||||||||||| || |
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| T |
3297976 |
ttaggactgcttgatcttgatcgaagatcattgaaacatgactgcgtggttttgctggccgcagtaaatcgtggtccgcattattattgatcctcctatg |
3297877 |
T |
|
| Q |
749 |
acatgctatc |
758 |
Q |
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|||||||||| |
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| T |
3297876 |
acatgctatc |
3297867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3298631 - 3298598
Alignment:
| Q |
1 |
aacaaataacatgttttattctatcaaccaaatt |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3298631 |
aacaaataacatgttttattctatcaaccaaatt |
3298598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 35249024 - 35248981
Alignment:
| Q |
252 |
taagtataaataaagtgtgtttaatattttattctaaattagtt |
295 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
35249024 |
taagtataaacaaagtgtgtttaatattttattctaagttagtt |
35248981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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