View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_24 (Length: 406)
Name: NF17576_low_24
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_24 |
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| [»] scaffold0160 (3 HSPs) |
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Alignment Details
Target: scaffold0160 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 20818 - 20747
Alignment:
| Q |
131 |
cgggcaagtctggcatgttacatgtttcttctctcacttcctgcatgtccatcttcaattaaatatcaataa |
202 |
Q |
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| T |
20818 |
cgggcaagtctggcatgttacatgtttcttctctcacttcctgcatgtccatcttcaattaaatatcaataa |
20747 |
T |
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Target: scaffold0160; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 20674 - 20629
Alignment:
| Q |
276 |
cttagtgaagaggaatgcttgtcacctactccttttatagtttcta |
321 |
Q |
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| T |
20674 |
cttagtgaagaggaatgcttgtcacctactccttttatagtttcta |
20629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 20606 - 20565
Alignment:
| Q |
344 |
aaaaccaaacaaattcatcataataataaaagttaactttgt |
385 |
Q |
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| T |
20606 |
aaaaccaaacaaattcatcataataataaaagttaactttgt |
20565 |
T |
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