View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_28 (Length: 394)
Name: NF17576_low_28
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 45693626 - 45693993
Alignment:
| Q |
12 |
caaaggtactaattaatatttttacaagcaagataactttgttttcttgtgtaataaaattcatatgcaatggcaactgctttgtttcaggaattttatg |
111 |
Q |
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| T |
45693626 |
caaaggtactaattaatatttttacaagcaagataactttgttttcttgtgtaataa--ttcatatgcaatggcaactgctttgtttcaggaattttatg |
45693723 |
T |
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| Q |
112 |
ggagaagacttggatggtttaggtctcaaagagcttcaaagtttggaacaacaacttgattcagctctcaaacaaattagatcacggaaggtaaagttaa |
211 |
Q |
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| T |
45693724 |
ggagaagacttggatggtttaggtctcaaagagcttcaaagtttggaacaacaacttgattcagctctcaaacaaattagatcacggaaggtaaagttaa |
45693823 |
T |
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| Q |
212 |
actatgctacattcagaatacttttggtgatttagtttgacgttttaattgaattatcctcacttaatttggattctcacgcagaaccaagttatgtatg |
311 |
Q |
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| T |
45693824 |
actatgctacattgagaatacttttggtgatgtagtttgacgttttaattgaattatcctcacttaatttcgattctcacgcagaaccaagttatgtatg |
45693923 |
T |
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| Q |
312 |
aatctatttcagaacttcagaaaaaggtgagtaatttcttcccctaaattttttcatcgtgatgattatg |
381 |
Q |
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| T |
45693924 |
aatctatttcagaacttcagaaaaaggtgagtaatttcttcccctaaattttttcatcgtgatgattatg |
45693993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 25541306 - 25541411
Alignment:
| Q |
100 |
aggaattttatgggagaagacttggatggtttaggtctcaaagagcttcaaagtttggaacaacaacttgattcagctctcaaacaaattagatcacgga |
199 |
Q |
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| T |
25541306 |
aggaattttatgggtgaagaacttgatggcctaagtatgaaagagcttcagcatttggagcatcaacttgattctgctctcaaacagattagatcaagga |
25541405 |
T |
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| Q |
200 |
aggtaa |
205 |
Q |
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|||||| |
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| T |
25541406 |
aggtaa |
25541411 |
T |
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