View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17576_low_29 (Length: 391)
Name: NF17576_low_29
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 34712320 - 34712678
Alignment:
| Q |
16 |
ataaacaccagtaatatgttcatcgaaaacttggttacaaaataaatctcatatattaatcaatcctagagaaggacatctaatttacaaaactaaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712320 |
ataaacaccagtaatatgttcatcgaaaacttggttacaaaataaatctcatatattaatcaatcctagagaaggacatctaatttacaaaactaaaatt |
34712419 |
T |
|
| Q |
116 |
gtaaggctagtgcacatatagcaaaagtagtcgcaaccaacnnnnnnncccaactgcaaaggtactcatgtcaagcgatccaacgtctagaggttaaagc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712420 |
gtaaggctagtgcacatatagcaaaagtagtcgcaaccaacaaaaaaacccaactgcaaaggtactcatgtcaagcgatccaacgtctagaggttaaagc |
34712519 |
T |
|
| Q |
216 |
taactctaacaaatgatttcctgtgtcatatggaaggaaattttgtattcgatttccagcacaaaacctacatgcccaagattttatctctcaaccttaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712520 |
taactctaacaaatgatttcctgtgtcatatggaaggaaattttgtattcgatttccagcacaaaacctacatgcccaagattttatctctcaaccttaa |
34712619 |
T |
|
| Q |
316 |
taaaaatgatagagtgaactaacctgattcacgagagatgaggatattcaacgcaaatg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34712620 |
taaaaatgatagagtgaactaacctgattcacgagagatgaggatattcaacgcaaatg |
34712678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 27005109 - 27005468
Alignment:
| Q |
16 |
ataaacaccagtaatatgttcatcgaaaacttggttacaaaataaatctcatatattaatcaatcctagagaaggacatctaatttacaaaactaaaatt |
115 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
27005109 |
ataaacactagtaatatgttcgtcgaaaacttggttacaaaataaatctcatatattaatcaatcctagagaaggacatttaatttacaaaactaaaatt |
27005208 |
T |
|
| Q |
116 |
gtaaggctagtgcacatatagcaaaagtagtcgcaaccaacnnnnnnnc-ccaactgcaaaggtactcatgtcaagcgatccaacgtctagaggttaaag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27005209 |
gtaaggctagtgcacatatagcaaaagtagtcgcaaccaacaaaaaaaaaccaactgcaaaggtactcatgtcaagcgatccaacgtctagaggttaaag |
27005308 |
T |
|
| Q |
215 |
ctaactctaacaaatgatttcctgtgtcatatggaaggaaattttgtattcgatttccagcacaaaacctacatgcccaagattttatctctcaacctta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||| || ||||||||||||||||||| |
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|
| T |
27005309 |
ctaactctaacaaatgatttcctgtgtcatatggaaggaaattttgtatttgatttccaacacataacccacatgcctaacattttatctctcaacctta |
27005408 |
T |
|
| Q |
315 |
ataaaaatgatagagtgaactaacctgattcacgagagatgaggatattcaacgcaaatg |
374 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005409 |
ataaaaatgatagagttaactaacctgattcacgagagatgaggatattcaacgcaaatg |
27005468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 36 - 374
Target Start/End: Original strand, 15099077 - 15099429
Alignment:
| Q |
36 |
catcgaaaacttggttacaaaataaatctcatatattaatcaatcctagagaaggacatctaatttacaaaac---taaaattgtaaggctagtgcacat |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
15099077 |
catcgaaaacttggttacaaaataaatctcatatatttatcaatcctagagaaggacatctaatttacaaaactaataaaattgtaaggccagtgcacat |
15099176 |
T |
|
| Q |
133 |
atagcaaaagtagtcgcaac--caacnnnnnnncccaactgcaaaggtactcatgtcaagcgatccaacgtctagaggttaaagctaactctaacaaatg |
230 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
15099177 |
atagcaaaagtagtcgaaacgaaaaaaaaaacacccaactgcaaaggtactcatgacaagcgatccaacgtctagtggttaaagctacctctaacaaatg |
15099276 |
T |
|
| Q |
231 |
atttcctgtgtcatatggaaggaaatttt--gta-------ttcgatttccagcacaaaacctacatgcccaagattttatctctcaaccttaataaaaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||| |
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|
| T |
15099277 |
atttcctgtgtcatatggaaggaaattttaattatatatcgtttgatttccagcacagaacccatatgcccaagattttatctctctaccttaataaaaa |
15099376 |
T |
|
| Q |
322 |
tgatagagtgaactaacctgattcacgagagatgaggatattcaacgcaaatg |
374 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
15099377 |
tgacagagtgaactaacctgattcatgagagatgaggatagtcaacgcaaatg |
15099429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 86 - 368
Target Start/End: Complemental strand, 52616350 - 52616054
Alignment:
| Q |
86 |
gaaggacatctaatttacaaaactaaaa---ttgtaaggctagtgcacatatagcaaaagtagtcgcaaccaacnnnnnnnc--ccaactgcaaaggtac |
180 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||||||||||||| || | | |||||| ||||||||| |
|
|
| T |
52616350 |
gaagaacatctaatttacaaaactaaaaaaattgtacggccagtgaacatatagcgaaagtagtcgcaaacatcaaaaaaacacccaactacaaaggtac |
52616251 |
T |
|
| Q |
181 |
tcatgtcaagcgatccaacgtctagaggttaaagctaactctaacaaatgatttcctgtgtcatatggaaggaaatttt---------gtattcgatttc |
271 |
Q |
| |
|
|| || |||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
52616250 |
tcgtgacaagggattcaacgtctagtggttaaagctacctctaacaaatgatttcctgtgtcatatggaaggaaattttaattatttattgttcgatttc |
52616151 |
T |
|
| Q |
272 |
cagcacaaaacctacatgcccaagattttatctctcaaccttaataaaaatgatagagtgaactaacctgattcacgagagatgaggatattcaacg |
368 |
Q |
| |
|
||||| | |||| | ||||||||||| ||||||||| ||||||| ||||| || || ||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
52616150 |
cagcatagaacccatatgcccaagatgttatctctctaccttaagaaaaacgacagggtgaactaacctgattcacgagaagtgaggatagtcaacg |
52616054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 374
Target Start/End: Original strand, 21738782 - 21739140
Alignment:
| Q |
27 |
taatatgttcatcgaaaacttggttacaaaataaatctcatatattaatcaatcctagagaaggacatctaatttacaaaactaaaattgtaaggctagt |
126 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |
|
|
| T |
21738782 |
taatatgttcatcgaaaacttggctacaaaataaatctcatatattaatcaatcctagagaaggacatctaatttacaaaactaaaa--gtaaggccact |
21738879 |
T |
|
| Q |
127 |
gcacatatagcaaaagtagtcgcaaccaac--nnnnnnncccaactgcaaaggtactcatgtcaagcgatccaacgtctagaggttaaagctaactctaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||| | ||||||||| |||||| |
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|
| T |
21738880 |
gcacatatagcaaaagtagtcgcaaccaacaaaaaaacacccaactgcaaagttactcatgacaagcgatccaatgtctagtgcttaaagctacctctaa |
21738979 |
T |
|
| Q |
225 |
caaatgatttcctgtgtcatatggaaggaaattt------tgta-----ttcgatttccagcacaaaacctacatgcccaagattttatctctcaacctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
21738980 |
caaatgatttcctgtgtcatatggaaggaaattttaattatgtatattgttcgatttccagcacagaacccatatgcccaagattttatctctttgcctt |
21739079 |
T |
|
| Q |
314 |
aataaaaatgatagagtgaactaacctgattcacgagagatgaggatattcaacgcaaatg |
374 |
Q |
| |
|
|||||||| || | |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21739080 |
aataaaaacgacatagtgaactaacctgattcacgagagatgaggatagtcaacgcaaatg |
21739140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 36 - 374
Target Start/End: Complemental strand, 37942562 - 37942210
Alignment:
| Q |
36 |
catcgaaaacttggttacaaaataaatctcatatattaatcaatcctagagaaggacatctaatttacaaaac---taaaattgtaaggctagtgcacat |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
37942562 |
catcgaaaacttggttacaaaataaatctcatatatttatcaatcctagagaaggacatctaatttacaaaactaataaaattgtaaggccagtgcacat |
37942463 |
T |
|
| Q |
133 |
atagcaaaagtagtcgcaac--caacnnnnnnncccaactgcaaaggtactcatgtcaagcgatccaacgtctagaggttaaagctaactctaacaaatg |
230 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
37942462 |
atagcaaaagtagtcgaaacgaaaaaaaaaacacccaactgcaaaggtactcatgacaagcgatccaacgtctagtggttaaagctacctctaacaaatg |
37942363 |
T |
|
| Q |
231 |
atttcctgtgtcatatggaaggaaatttt--gta-------ttcgatttccagcacaaaacctacatgcccaagattttatctctcaaccttaataaaaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||||| | |||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37942362 |
atttcctgtgtcatatggaaggaaattttaattatatatcgtttgatttccagcatagaacccatatgcccaagattttatctctctaccttaataaaaa |
37942263 |
T |
|
| Q |
322 |
tgatagagtgaactaacctgattcacgagagatgaggatattcaacgcaaatg |
374 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
37942262 |
cgacagagtgaactaacctgattcatgagagatgaggatagtcaacgcaaatg |
37942210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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