View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_30 (Length: 388)
Name: NF17576_low_30
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 34353182 - 34352896
Alignment:
| Q |
1 |
ctagcaatgatgatctcaatattgccgatgatattacacaggtcggtttcacactatttttgttttgttttg-----cttattttgtctgtgcttgagaa |
95 |
Q |
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| T |
34353182 |
ctagcaacgatgatctcaatattgccgatgatattacacaggtcggtttcacactatttttgttttgttttgttttgcttattttgtctgtgcttgagaa |
34353083 |
T |
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| Q |
96 |
tatccaagcaattcagcgatgaatatccattttttctgttgacatggtacagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggc |
195 |
Q |
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| T |
34353082 |
tatccaagcaattcagcgatgaatatccattttttctgttgacatggtacagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggc |
34352983 |
T |
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| Q |
196 |
tcagttgctaatattgctgctaagcttgagcttatggagccatgttgtagtgtcaaagacaggtaggtgtgtgtgacagcattagtt |
282 |
Q |
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| T |
34352982 |
tcagttgctaatattgctgctaagcttgagcttatggagccatgttgtagtgtcaaagacaggtaggtgtgtgtgacagcattagtt |
34352896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 34358807 - 34358547
Alignment:
| Q |
1 |
ctagcaatgatgatctcaatattgccgatgatattacacaggtcggtttcacac--tatttttgttttgttttg-cttattttgtctgtgcttgagaata |
97 |
Q |
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| T |
34358807 |
ctagcaacgatgttctcaatattgccgatgatattacacaggtcggtttcacacactatttttgttttgttttttcttattttgt---------agcat- |
34358718 |
T |
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| Q |
98 |
tccaagcaattcagcgatgaatatccattttttctgttga---catggtacagctcataggaaaaacgccaatggtttacctgaagagtatcactaaggg |
194 |
Q |
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| T |
34358717 |
-----gcaattcggtgatgaatctccattttttttgctgcttgcatggcacaactcataggaaaaacgccaatggtttacctgaagagtatcactaaggg |
34358623 |
T |
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| Q |
195 |
ctcagttgctaatattgctgctaagcttgagcttatggagccatgttgtagtgtcaaagacaggtaggtgtgtgtg |
270 |
Q |
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| T |
34358622 |
ctcagttgctaacattgctgcaaagcttgaggttatggagccttgttgtagtgtcaaagacaggtagatgtgtgtg |
34358547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 34369126 - 34369011
Alignment:
| Q |
145 |
cagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaatattgctgctaagcttgagcttatggagccatgttgta |
244 |
Q |
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| T |
34369126 |
cagctcataggaaaaacaccaatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgttgta |
34369027 |
T |
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| Q |
245 |
gtgtcaaagacaggta |
260 |
Q |
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| T |
34369026 |
gtgtcaaagacaggta |
34369011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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