View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17576_low_32 (Length: 375)

Name: NF17576_low_32
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17576_low_32
NF17576_low_32
[»] chr1 (3 HSPs)
chr1 (1-147)||(12727629-12727767)
chr1 (302-356)||(12727420-12727474)
chr1 (212-256)||(12727520-12727564)
[»] chr7 (3 HSPs)
chr7 (212-256)||(11242118-11242162)
chr7 (212-256)||(11269231-11269275)
chr7 (212-256)||(11280928-11280972)
[»] chr3 (2 HSPs)
chr3 (214-255)||(16999860-16999901)
chr3 (212-256)||(22653948-22653992)
[»] chr8 (1 HSPs)
chr8 (212-256)||(9799094-9799138)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 12727767 - 12727629
Alignment:
Q  1 ctccaccactgtcttttaaaatcttataagacaggtatgacattcaaattgaagaaagtttcgttaattttgatccaaaatatcctccatcattatcttt 100  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12727767 ctccaccattgtcttttaaaattttataagacaggtatgacattcaaattgaagaaagtttcgttaattttgatccaaaatatcctccaccattatcttt 12727668  T
Q  101 tacagttttacaattttatgtcgtttttagcattcaaattcaataaa 147  Q
            |||||||||||||||||||||||||||||||||||||||    
T  12727667 --------tacaattttatgtcgtttttagcattcaaattcaataaa 12727629  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 12727474 - 12727420
Alignment:
Q  302 cacacggtccttactgacccatgtcgagtatttcgatcataagttaagttgcaat 356  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  12727474 cacacggtccttactgactcatgtccagtatttcgatcataagttaagttgcaat 12727420  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 12727564 - 12727520
Alignment:
Q  212 aggacaagtaatgaagaaatgagagcatttggcataggtaggagc 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12727564 aggacaagtaatgaagaaatgagagcatttggcataggtaggagc 12727520  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 11242118 - 11242162
Alignment:
Q  212 aggacaagtaatgaagaaatgagagcatttggcataggtaggagc 256  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||    
T  11242118 aggacaagtaacgaagaaatgagagcatttggctgaggtaggagc 11242162  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 11269275 - 11269231
Alignment:
Q  212 aggacaagtaatgaagaaatgagagcatttggcataggtaggagc 256  Q
    |||| |||||||||||||||||||||||||||   ||||||||||    
T  11269275 aggataagtaatgaagaaatgagagcatttggttgaggtaggagc 11269231  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 11280928 - 11280972
Alignment:
Q  212 aggacaagtaatgaagaaatgagagcatttggcataggtaggagc 256  Q
    |||| |||||||||||||||||||||||||||   ||||||||||    
T  11280928 aggataagtaatgaagaaatgagagcatttggttgaggtaggagc 11280972  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 16999901 - 16999860
Alignment:
Q  214 gacaagtaatgaagaaatgagagcatttggcataggtaggag 255  Q
    ||||||||| |||||||||||||||||||||  |||||||||    
T  16999901 gacaagtaacgaagaaatgagagcatttggctgaggtaggag 16999860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 22653992 - 22653948
Alignment:
Q  212 aggacaagtaatgaagaaatgagagcatttggcataggtaggagc 256  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||    
T  22653992 aggacaagtaacgaagaaatgagagcatttagccgaggtaggagc 22653948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 9799138 - 9799094
Alignment:
Q  212 aggacaagtaatgaagaaatgagagcatttggcataggtaggagc 256  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||    
T  9799138 aggacaagtaacgaagaaatgagagcatttggttgaggtaggagc 9799094  T

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