View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_33 (Length: 374)
Name: NF17576_low_33
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 44841746 - 44841391
Alignment:
| Q |
1 |
aatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtgttcttcttgtagttttgctac |
100 |
Q |
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| T |
44841746 |
aatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtgttcttcttgtagttttgctac |
44841647 |
T |
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| Q |
101 |
ttagatcgtgaggtggaaccgagggaggttgatgctgatgaatgtggaacaaggccttccatatactgatgatgttaccttatggccaataatgtgtcct |
200 |
Q |
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| T |
44841646 |
ttagatcgtgaggtggaactgagggaggttgatgccgatgaatgtggaacaaggccttccatatactgatgatgttaccttatggccaataatgtgtcct |
44841547 |
T |
|
| Q |
201 |
aacattactattttatcaggattattttggtgtgtatccacttatgaaggtgtatgttatcacctctcacaaacctcactactctgtgtgtaatgctatg |
300 |
Q |
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| T |
44841546 |
aacattactattttatcaggattattttggtgtgtatccacttatgaaggtgtgtgttatcacctctcacaaacctcacaactctgtgtgtaatgctata |
44841447 |
T |
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| Q |
301 |
acgtttttgaaatacgtttctgagtgtaattgcatctttaacatttgtatctgatg |
356 |
Q |
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| T |
44841446 |
acgtttttgaaatacgtttctgagtgtaattgcatctttaacatttgtatctgatg |
44841391 |
T |
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