View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_41 (Length: 341)
Name: NF17576_low_41
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 18110746 - 18110436
Alignment:
| Q |
18 |
acacataggctccaaatgcagcaatcactagaactgcagcacctacattttcaaccaaatgtttctcttcaccactcaatttcccttcagcaattctcgt |
117 |
Q |
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| T |
18110746 |
acacataggctccaaatgcagcaatcactagaactgcagcacctacattttcaactaaatgtttctcttcaccactcaatttcccttcagcaattctcgt |
18110647 |
T |
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| Q |
118 |
cacgaactgagaagaagtagcagcaaattttctgattccattctttccttcttgatttggaggaattctgcagcaagattccttttccttctctggaaca |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110646 |
cacaaactgagaagaagtagcagcaaattttctgattccattctttccttcttgattgggaggaattctgcagcaagattccttttccttctctggaaca |
18110547 |
T |
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| Q |
218 |
tttggagcagaaggttctgctttttcaacttccttttcttctaagttttgattcttgcttgactcataagtcttctcatttttctcttcaacttcctcct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110546 |
tttggagcagaaggttctgctttttcaacttccttttcttctaagttttgattcttgcttgactcataagtcttctcatttttctcttcaacttcctcct |
18110447 |
T |
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| Q |
318 |
tctttgagttc |
328 |
Q |
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||||||||||| |
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| T |
18110446 |
tctttgagttc |
18110436 |
T |
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