View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17576_low_42 (Length: 340)

Name: NF17576_low_42
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17576_low_42
NF17576_low_42
[»] chr3 (15 HSPs)
chr3 (36-229)||(50381873-50382066)
chr3 (36-213)||(50382661-50382839)
chr3 (115-213)||(50838259-50838358)
chr3 (123-225)||(1576510-1576613)
chr3 (115-225)||(1577511-1577621)
chr3 (115-213)||(35942777-35942876)
chr3 (115-225)||(54560817-54560928)
chr3 (78-169)||(31799551-31799641)
chr3 (115-225)||(47471476-47471587)
chr3 (115-192)||(28539357-28539432)
chr3 (115-192)||(43546424-43546501)
chr3 (116-213)||(54560069-54560168)
chr3 (115-171)||(50837538-50837594)
chr3 (115-171)||(47470773-47470829)
chr3 (103-166)||(31800353-31800415)
[»] chr7 (8 HSPs)
chr7 (36-229)||(32390810-32391004)
chr7 (48-193)||(32389986-32390127)
chr7 (77-171)||(24240645-24240739)
chr7 (125-213)||(6733053-6733141)
chr7 (123-225)||(36068115-36068218)
chr7 (115-209)||(3986569-3986662)
chr7 (115-168)||(30480695-30480749)
chr7 (117-168)||(3987239-3987289)
[»] chr4 (11 HSPs)
chr4 (36-192)||(11147803-11147959)
chr4 (107-192)||(11148089-11148173)
chr4 (115-225)||(620494-620605)
chr4 (115-225)||(621536-621647)
chr4 (81-213)||(31633579-31633711)
chr4 (113-192)||(31632440-31632517)
chr4 (123-210)||(21226532-21226617)
chr4 (123-181)||(27455722-27455780)
chr4 (115-213)||(27454952-27455051)
chr4 (132-171)||(31779811-31779850)
chr4 (115-186)||(49681327-49681397)
[»] scaffold0169 (2 HSPs)
scaffold0169 (36-192)||(26742-26898)
scaffold0169 (80-193)||(27368-27478)
[»] chr8 (9 HSPs)
chr8 (48-192)||(21190101-21190244)
chr8 (115-225)||(14791454-14791565)
chr8 (80-192)||(26544582-26544695)
chr8 (116-213)||(14790708-14790807)
chr8 (115-192)||(20112277-20112353)
chr8 (83-169)||(45105524-45105610)
chr8 (115-223)||(20111519-20111626)
chr8 (100-192)||(36338478-36338570)
chr8 (147-198)||(9480482-9480531)
[»] chr1 (9 HSPs)
chr1 (115-198)||(36475971-36476054)
chr1 (77-195)||(26990980-26991097)
chr1 (115-192)||(36475331-36475407)
chr1 (115-213)||(27585327-27585424)
chr1 (115-192)||(47445775-47445852)
chr1 (115-187)||(47445051-47445123)
chr1 (77-168)||(5158733-5158824)
chr1 (115-192)||(27585986-27586061)
chr1 (81-213)||(45575965-45576096)
[»] chr2 (7 HSPs)
chr2 (115-213)||(4593404-4593502)
chr2 (59-213)||(45114835-45114992)
chr2 (116-213)||(4592663-4592762)
chr2 (115-213)||(22539114-22539210)
chr2 (123-225)||(10256498-10256600)
chr2 (115-192)||(33002935-33003010)
chr2 (115-168)||(10255751-10255804)
[»] scaffold0020 (1 HSPs)
scaffold0020 (77-186)||(2012-2120)
[»] chr6 (7 HSPs)
chr6 (115-207)||(17732816-17732908)
chr6 (115-225)||(15348197-15348307)
chr6 (115-192)||(6009428-6009505)
chr6 (116-213)||(15347468-15347567)
chr6 (115-225)||(6008665-6008776)
chr6 (115-225)||(17732039-17732150)
chr6 (115-225)||(30710279-30710389)
[»] chr5 (17 HSPs)
chr5 (115-225)||(5348506-5348617)
chr5 (115-192)||(31808335-31808412)
chr5 (77-186)||(33136550-33136659)
chr5 (116-213)||(5347759-5347858)
chr5 (100-195)||(21012396-21012490)
chr5 (115-213)||(36429318-36429417)
chr5 (115-192)||(7493209-7493287)
chr5 (78-168)||(25215448-25215537)
chr5 (78-168)||(25279599-25279688)
chr5 (115-213)||(29500705-29500804)
chr5 (115-171)||(7491330-7491386)
chr5 (77-213)||(27915015-27915149)
chr5 (115-181)||(36430066-36430132)
chr5 (115-192)||(36681851-36681926)
chr5 (79-168)||(10326808-10326897)
chr5 (123-207)||(29500051-29500136)
chr5 (125-169)||(27597423-27597467)
[»] scaffold0380 (1 HSPs)
scaffold0380 (77-191)||(7502-7615)
[»] scaffold0102 (2 HSPs)
scaffold0102 (115-225)||(33144-33256)
scaffold0102 (115-192)||(32409-32487)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 9e-61; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 50382066 - 50381873
Alignment:
Q  36 tcatttacccccatgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacgg 135  Q
    ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |    
T  50382066 tcatttatccccatgacgtgacataaaattcagccaatgtggaggtgccacatgtacatttatttgccacgtcatatggtttaacagccaaaacaaacag 50381967  T
Q  136 agggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttag-ggggtttttgacgaatcctacaatttcgggg 229  Q
    |||||| |||||||||||| ||| |||||||||| | ||| ||||||||||||||||||| || |||||||||||| ||| ||||||||||||||    
T  50381966 aggggggtaattgactaacgtttgacaatttcagag-gggatttgaagtttcttaaatgtcagaggggtttttgacaaatgctacaatttcgggg 50381873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 50382661 - 50382839
Alignment:
Q  36 tcatttacccccatgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacgg 135  Q
    ||||||||| | |||| ||  ||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||| || |||||||||||     
T  50382661 tcatttacctctatgatgtggcataaaattcagccaatgtggaggtgccacgtgtacatttacttaccacgtcatatggtttaataatcaaaacaaacga 50382760  T
Q  136 agggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggg-gtttttgacgaa 213  Q
    |||||| |||||||||||| ||| || |||||| || ||  |||||||||||||||| || ||||| ||||||||||||    
T  50382761 aggggggtaattgactaacgtttgaccatttcatgggggtgtttgaagtttcttaaaagtcaggggagtttttgacgaa 50382839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 50838259 - 50838358
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||| | ||||||||||  | |||||||||||||||||  ||| ||||||||||||||||    
T  50838259 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgataatttcaggggagtttttgaagtttcttaaaaattaggggggtttttgacgaa 50838358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 1576613 - 1576510
Alignment:
Q  123 ccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaatcctacaa 221  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||||| || |||||||||||| ||||  | | ||||||||||||||||  ||||||    
T  1576613 ccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaa 1576514  T
Q  222 tttc 225  Q
    ||||    
T  1576513 tttc 1576510  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 1577511 - 1577621
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  ||||||||||| || |||||||||||| ||||  | | ||||||||||||||||    
T  1577511 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcaggg-ggtttttgaagtttcctaaaaatcaggggggtttttgacgaa 1577609  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  1577610 agctacaatttc 1577621  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 35942777 - 35942876
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttc-agggagggttttgaagtttcttaaatgttagggggtttttgacgaa 213  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||    |||||||||||| |||| || ||||| |||||||||||    
T  35942777 tttaacaaccaaaacaaatggaggggggtaattgactaacgtttaacaatttcaaggggtttttttgaagtttcataaaagtcaggggatttttgacgaa 35942876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 54560817 - 54560928
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  ||||||||||| |  |||||||||||| ||||  | | ||||||||||||||||    
T  54560817 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaa 54560916  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  54560917 agctacaatttc 54560928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 31799641 - 31799551
Alignment:
Q  78 aggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcag 169  Q
    ||||||||||| | || |||  ||||| |||||| |||||||||  |||||||||||||||||| |||||||||||||||| ||||||||||    
T  31799641 aggtgccacatattcagttaactgccatgtcatagggtttaacagtcaaaacaaacggaggggg-taattgactaacatttgacaatttcag 31799551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 47471476 - 47471587
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||| ||||||| |||||||||||| |||  ||||||||||| || |||||||||||| ||||  | | ||||| ||||||||||    
T  47471476 tttaacagccaaaacaaacagaggggggtaattgactaacgtttggcaatttcaggggggtttttgaagtttcctaaaaatcagggggggttttgacgaa 47471575  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  47471576 agctacaatttc 47471587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 28539357 - 28539432
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||||||| || ||||||||||||| ||||||||||| | || ||||||||||||||||||||    
T  28539357 tttaacagccaaaacaaacggagagg-ataattgactaacgtttaacaattttatgg-gggttttgaagtttcttaaa 28539432  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 43546501 - 43546424
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||||||||||| ||||||||| || ||| | |||||||| | || |||||||||||||||||    
T  43546501 tttaacagccaaaacaaacggaggggggtaattgactgacgtttgataatttcagaggggtttttgaagtttcttaaa 43546424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 54560168 - 54560069
Alignment:
Q  116 ttaacaaccaaaacaaacgga-gggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||| | ||||||| || || |||||||||||||||||  | | ||||||||||||||||    
T  54560168 ttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttgacgaa 54560069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 50837594 - 50837538
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcaggg 171  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  |||||||||||    
T  50837594 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcaggg 50837538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 47470829 - 47470773
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcaggg 171  Q
    ||||||| ||||||||||||||||||| ||||||||| || ||| | ||||||||||    
T  47470829 tttaacagccaaaacaaacggaggggggtaattgactgacgtttgataatttcaggg 47470773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 31800353 - 31800415
Alignment:
Q  103 cacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaattt 166  Q
    |||||||||  ||||||||| |||||||||||||||||| ||| |||||||| ||| |||||||    
T  31800353 cacgtcatagcgtttaacaatcaaaacaaacggaggggg-taactgactaacgtttcacaattt 31800415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 32390810 - 32391004
Alignment:
Q  36 tcatttaccccc--atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaac 133  Q
    ||||||||||||  |||||||  ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  32390810 tcatttacccccctatgacgtggcataaaattcaaccaatgtggaggtgccacgtgtacatttacttgccacgtcatatggtttaacagtcaaaacaaac 32390909  T
Q  134 ggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgacgaatcctacaatttcgggg 229  Q
    |||||||| |||||||||||| ||| | |||||||||| |  |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||    
T  32390910 ggaggggggtaattgactaacgtttgataatttcaggg-gatttttgaagtttcttaaatgtcaggggggttttgacgaatgctacaatttcgggg 32391004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 32390127 - 32389986
Alignment:
Q  48 atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataatt 147  Q
    |||||||| ||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  32390127 atgacgtagcataaaattcagctaatgtagaggtgtcacgtgtacatttacttgccacgtcatatggtttaacaaccaaaataaatgga-ggggataatt 32390029  T
Q  148 gactaacatttaacaatttcagggagggttttgaagtttcttaaat 193  Q
    ||||||| ||| ||||||||||   ||||||| |||||||||||||    
T  32390028 gactaacgtttgacaatttcag---gggttttaaagtttcttaaat 32389986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 24240739 - 24240645
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcaggg 171  Q
    |||||||||| |||||| ||| ||||||||||| | ||| ||||| |||||||| || ||||||| |||||||||||||||||||||||||||||    
T  24240739 gaggtgccacgtgtacagttaattgccacgtcacagggtgtaacagccaaaacagacagaggggggtaattgactaacatttaacaatttcaggg 24240645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 6733141 - 6733053
Alignment:
Q  125 aaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgacgaa 213  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||  | ||||||||||| ||||| || |||||||||||||||||    
T  6733141 aaaacaaacggaggaggataattgactaacgtttaacaatttcatgggagtttttgaagttttttaaaagtcagggggtttttgacgaa 6733053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 36068115 - 36068218
Alignment:
Q  123 ccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttaggggg-tttttgacgaatcctacaa 221  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| |  ||||||| |||| ||||  | |||||| |||||||||||  ||||||    
T  36068115 ccaaaacaaacggaggggggtaattgactaacatttgacaatttcagggggttttttgaaatttcctaaaaatcagggggttttttgacgaaagctacaa 36068214  T
Q  222 tttc 225  Q
    ||||    
T  36068215 tttc 36068218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 3986662 - 3986569
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtt-agggggtttttga 209  Q
    ||||||||||||||||||||||||||  ||||||| |||||||| ||||||| || | |  ||||||| |||||||||  || |||||||||||||    
T  3986662 tttaacaaccaaaacaaacggagggg--taattgattaacattttacaattttagagggttttttgaaatttcttaaaaattaagggggtttttga 3986569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 30480695 - 30480749
Alignment:
Q  115 tttaacaaccaaaac-aaacggagggggataattgactaacatttaacaatttca 168  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  30480695 tttaacagccaaaaccaaacggagggggataattgactaacgtttgacaatttca 30480749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 3987239 - 3987289
Alignment:
Q  117 taacaaccaaaacaaacggagggggataattgactaacatttaacaatttca 168  Q
    ||||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  3987239 taacagccaaaacaaacggaggggg-taattgactaacgtttgacaatttca 3987289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 11147959 - 11147803
Alignment:
Q  36 tcatttaccccc-atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacg 134  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  11147959 tcatttaccccctatgacgtgacataaaattcaaccaatgtggaggtgccacatgtacatttacttgccatgtc-tatggtttaacagccaaaacaaacg 11147861  T
Q  135 gagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| |||||||||||| ||| ||||||||| ||    |||||||||||||||||    
T  11147860 gaggggggtaattgactaacgtttgacaatttcaagggaatttttgaagtttcttaaa 11147803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 11148089 - 11148173
Alignment:
Q  107 tcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    || |||||||||||||||||    
T  11148089 tcatatggtttaacaaccaaaacaaacggaggggg-taattgactaacatttgacaatttcataagggtttttgaagtttcttaaa 11148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 620605 - 620494
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttaggggg-tttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  ||||||||||| || |||||||||||| ||||  | |||||| |||||||||||    
T  620605 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcagggggatttttgacgaa 620506  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  620505 aactacaatttc 620494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 621536 - 621647
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  ||||||||||| || |||||||||||| ||||  | | ||||||||||||||||    
T  621536 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttgacgaa 621635  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  621636 agctacaatttc 621647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 31633579 - 31633711
Alignment:
Q  81 tgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttg 180  Q
    |||||||||||||| || ||| || |||| | ||||||||| || |||||||||||||||| |||| ||||||  ||| ||||||| | || || |||||    
T  31633579 tgccacatgtacatataattgtcatgtcacagggtttaacagcccaaacaaacggaggggg-taatggactaatgtttgacaattttatgggggtttttg 31633677  T
Q  181 aagtttcttaaatgtt-agggggtttttgacgaa 213  Q
    ||||||||||||  || |||||||||||||||||    
T  31633678 aagtttcttaaaaattaagggggtttttgacgaa 31633711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 31632517 - 31632440
Alignment:
Q  113 ggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||||| || ||||||||||||||||  ||||||||||| ||| |||||||   |||||||||||||||||||||||    
T  31632517 ggtttaacagcccaaacaaacggaggggggcaattgactaacgtttgacaattt--aggagggttttgaagtttcttaaa 31632440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 21226532 - 21226617
Alignment:
Q  123 ccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgac 210  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||| | || ||||||| ||||||||| || ||| ||||||||||    
T  21226532 ccaaaacaaacggaggggg-taattgactaatgtttaacaatttcagag-ggtttttgaaatttcttaaaagtcaggaggtttttgac 21226617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 27455722 - 27455780
Alignment:
Q  123 ccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttga 181  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||| || ||||||    
T  27455722 ccaaaacaaacggaggggggtaattgactaacatttggcaatttcaggggggtttttga 27455780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 27455051 - 27454952
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| ||||||||| || ||| | |||||||  | || |||| ||||||||||||  | | ||||||||||||||||    
T  27455051 tttaacagccaaaacaaacggaggggggtaattgactgacgtttgataatttcaaaggggtttttcaagtttcttaaaaatcaggggggtttttgacgaa 27454952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 31779850 - 31779811
Alignment:
Q  132 acggagggggataattgactaacatttaacaatttcaggg 171  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  31779850 acggagggggataattgactaacgtttaacaatttcaggg 31779811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 49681397 - 49681327
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagttt 186  Q
    ||||||| |||||||||||||| |||||||||| |||| | ||| |||||||||| | || |||||||||||    
T  49681397 tttaacagccaaaacaaacgga-ggggataattaactagcgtttgacaatttcagaggggtttttgaagttt 49681327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 26898 - 26742
Alignment:
Q  36 tcatttaccccc-atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacg 134  Q
    |||||||||||| ||||| |  ||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||| |||||| |||||| |||||    
T  26898 tcatttaccccctatgacatggcataaaattcagccaatgtggaggtgtcacatgtacatttacttgccacatcatatggattaacagccaaaataaacg 26799  T
Q  135 gagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    || | || || ||| ||||| ||| ||||||||||| ||  |||||||||||||||||    
T  26798 gatgtgg-tagttgtctaacgtttgacaatttcaggaagatttttgaagtttcttaaa 26742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 27368 - 27478
Alignment:
Q  80 gtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggtttt 179  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||| | ||| |||||||  | |||| ||||    
T  27368 gtgccacatgtacatttacatgccacatcatatggtttaacagccaaaacaaacggaggggg-taattgactatcgtttgacaattt--gagaggttttt 27464  T
Q  180 gaagtttcttaaat 193  Q
     |||||||||||||    
T  27465 taagtttcttaaat 27478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 21190244 - 21190101
Alignment:
Q  48 atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataatt 147  Q
    |||||||  ||||||||||| ||||||| ||||||||||||| |||||||||  ||||||||||||||||||||  ||| ||||| |||||||| |||||    
T  21190244 atgacgtggcataaaattcagccaatgtggaggtgccacatgcacatttactcaccacgtcatatggtttaacagtcaatacaaaaggaggggg-taatt 21190146  T
Q  148 gactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||| | ||||||| ||||  |||| ||||| ||||||    
T  21190145 gactaacgtttgataatttcatggagttttttaaagttccttaaa 21190101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 14791454 - 14791565
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  ||||||||||| |  |||||||||||| ||||  | | ||||||||||||||||    
T  14791454 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaa 14791553  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  14791554 agctacaatttc 14791565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 26544695 - 26544582
Alignment:
Q  80 gtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataa-ttgactaacatttaacaatttcagggagggttt 178  Q
    ||||||| |||||| ||| ||||||||||||||| ||||| | ||||||||||| ||||||| ||| ||||||||| ||| ||||||||| ||  | |||    
T  26544695 gtgccacgtgtacagttaattgccacgtcatatgatttaatagccaaaacaaacagagggggttaatttgactaacgtttgacaatttcaagggtgtttt 26544596  T
Q  179 tgaagtttcttaaa 192  Q
    | ||||||||||||    
T  26544595 tcaagtttcttaaa 26544582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 14790807 - 14790708
Alignment:
Q  116 ttaacaaccaaaacaaacgga-gggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||| | |||||||||| || |||||||||||||||||  | | ||||||||||||||||    
T  14790807 ttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaa 14790708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 20112277 - 20112353
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||| | |||||||| | || |||||||||||||||||    
T  20112277 tttaacagccaaaacaaacggaggggg-taattgactaacgtttgataatttcagtggggtttttgaagtttcttaaa 20112353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 45105610 - 45105524
Alignment:
Q  83 ccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcag 169  Q
    |||| |||||| ||| |||||||||| || || |||||  |  |||||||||||||||| |||||||||||| ||| ||||||||||    
T  45105610 ccacgtgtacaattaattgccacgtcttaggggttaactgctcaaacaaacggaggggggtaattgactaacgtttgacaatttcag 45105524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 20111626 - 20111519
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgacgaat 214  Q
    ||||||| | ||||||||||||||||| |||||||||||  ||| ||||||| |||  |  ||||||| |||| ||||  |||||||| ||||||||||     
T  20111626 tttaacagctaaaacaaacggaggggggtaattgactaatgtttgacaattttaggaggatttttgaaatttcctaaaaattaggggg-ttttgacgaaa 20111528  T
Q  215 cctacaatt 223  Q
     ||||||||    
T  20111527 gctacaatt 20111519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 36338478 - 36338570
Alignment:
Q  100 tgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    |||||||||| || ||||||||| ||||||||| |||  | |||||||||||||| ||| ||||||| |    || |||||||||||||||||    
T  36338478 tgccacgtcacatagtttaacaatcaaaacaaatggaatgagataattgactaacgtttgacaattttataagggtttttgaagtttcttaaa 36338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 9480531 - 9480482
Alignment:
Q  147 tgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttag 198  Q
    |||||||||||| ||||||| ||  ||||||||||||||||||||| |||||    
T  9480531 tgactaacatttgacaattttag--agggttttgaagtttcttaaaagttag 9480482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 36475971 - 36476054
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttag 198  Q
    ||||||| |||||||||| |||||||| |||||||||||| ||||||||||||| || || ||||||||||||||||| |||||    
T  36475971 tttaacagccaaaacaaatggaggggggtaattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaaagttag 36476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 26990980 - 26991097
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggt 176  Q
    |||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||   ||||||  ||||||| |||| ||| ||||||| ||||| | |    
T  26990980 gaggtgccacatgtgcagtaact-gccacgtcatagggtgtaacaaccaaaacaagttgaggggagtaattgattaacgtttgacaattttagggaagtt 26991078  T
Q  177 tttgaagtttcttaaatgt 195  Q
    |||||||||||||||||||    
T  26991079 tttgaagtttcttaaatgt 26991097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 36475407 - 36475331
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  36475407 tttaacagccaaaacaaacggaggggg-taattgactaacgtttaacaatttcagggtttcttttgaagtttcttaaa 36475331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 27585424 - 27585327
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgacgaa 213  Q
    ||||||| |||||||||||| | |||| |||| ||||||| ||| |||||||||||| || |||||||||||||||||  || |||| |||||||||||    
T  27585424 tttaacagccaaaacaaacgaatgggggtaatcgactaacgtttgacaatttcaggg-ggtttttgaagtttcttaaaaattgggggatttttgacgaa 27585327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 47445775 - 47445852
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    |||||||||||||||||| |||||||| |||||||||||| ||| | ||||||||||    |||||||||||||||||    
T  47445775 tttaacaaccaaaacaaatggaggggggtaattgactaacgtttgataatttcaggggtttttttgaagtttcttaaa 47445852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 47445123 - 47445051
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttc 187  Q
    ||||||| |||||| |||||||||||| |||||||||||| ||| ||||||||| || || ||||||||||||    
T  47445123 tttaacagccaaaataaacggaggggggtaattgactaacgtttgacaatttcatgggggtttttgaagtttc 47445051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 5158824 - 5158733
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttca 168  Q
    |||||| |||||| ||| |||  |||||||||||| || |||||||||||||||| ||||| |||| ||||||| ||| ||| |||||||||    
T  5158824 gaggtgtcacatgaacagttaactgccacgtcataaggattaacaaccaaaacaatcggagagggaaaattgaccaacgtttgacaatttca 5158733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 27585986 - 27586061
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||| |||||| |||||||| |||||||||||| ||||||||||||| ||||  |||||||||||||||||    
T  27585986 tttaacagccataacaaatggaggggg-taattgactaacgtttaacaatttca-ggagttttttgaagtttcttaaa 27586061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 45576096 - 45575965
Alignment:
Q  81 tgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttg 180  Q
    |||||||||||||| ||  || || |||| | ||||||| | || |||||||||||||||| |||||||||||| ||| ||||||| | || | ||||||    
T  45576096 tgccacatgtacatataaatgtcatgtcaaagggtttaatagcccaaacaaacggaggggg-taattgactaacgtttgacaattttatgg-gagttttg 45575999  T
Q  181 aagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    |||||| |||||  | | ||||||||||||||||    
T  45575998 aagttttttaaaaatcatgggggtttttgacgaa 45575965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 4593404 - 4593502
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||||||||||||| || |||  ||||||||||| |  |||||||||||| ||||  | |||||||||||||||||    
T  4593404 tttaacagccaaaacaaacggagggggataattgactgacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcagggggtttttgacgaa 4593502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 45114835 - 45114992
Alignment:
Q  59 taaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaa-caaacg-gagggggataattgactaacat 156  Q
    |||||| || ||||| | ||||||| |  |||||||||||||| ||||||||||||  ||||||| |||| |||||  ||||||| ||||| |||||| |    
T  45114835 taaaatccagccaatatggaggtgctatgtgtacatttacttgtcacgtcatatggcataacaacaaaaaacaaacaagaggggggtaattaactaacgt 45114934  T
Q  157 ttaacaatttcagggagggttttgaagtttcttaaatgt-tagggggtttttgacgaa 213  Q
    || ||||||||| |  |||||||||||||||||||| ||  |||||||||||||||||    
T  45114935 ttgacaatttcatgaggggttttgaagtttcttaaaagtcaagggggtttttgacgaa 45114992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 4592762 - 4592663
Alignment:
Q  116 ttaacaaccaaaacaaacgga-gggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||| | ||||||| || || |||||||||||||||||  | | ||||||||||||||||    
T  4592762 ttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttgacgaa 4592663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 22539114 - 22539210
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgacgaa 213  Q
    ||||||| |||||||| |||||||||  |||||||||||| ||| ||||||||| || |  ||||||||||| ||||| || |||||||| ||||||||    
T  22539114 tttaacagccaaaacatacggagggg--taattgactaacgtttgacaatttcatggggttttttgaagttttttaaaagtcagggggttcttgacgaa 22539210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 10256498 - 10256600
Alignment:
Q  123 ccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaatcctacaa 221  Q
    ||||||||||||||| ||| |||||||||||| |||  ||||||||||| || |||||||||||| || |  | | ||||||||||||||||  ||||||    
T  10256498 ccaaaacaaacggagcggggtaattgactaacgtttggcaatttcaggg-ggtttttgaagtttcctagaaatcaggggggtttttgacgaaagctacaa 10256596  T
Q  222 tttc 225  Q
    ||||    
T  10256597 tttc 10256600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 33003010 - 33002935
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||||||||||| ||||| |||||| ||| |||||||||  || | |||||||||||||||||    
T  33003010 tttaacatccaaaacaaacggaggggg-taattaactaacgtttgacaatttcatcga-gtttttgaagtttcttaaa 33002935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 10255804 - 10255751
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttca 168  Q
    ||||||| ||||||||||||||||||| ||||||||| || ||| | |||||||    
T  10255804 tttaacagccaaaacaaacggaggggggtaattgactgacgtttgataatttca 10255751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 2120 - 2012
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggt 176  Q
    |||||||||| ||| || |||  |||||||||| | ||| ||||| |||||||| |||||||||| |||||||||||| |||||||||||||||| || |    
T  2120 gaggtgccacgtgtgcagttaactgccacgtcacagggtgtaacagccaaaacagacggaggggggtaattgactaacgtttaacaatttcaggg-ggtt 2022  T
Q  177 tttgaagttt 186  Q
    ||||||||||    
T  2021 tttgaagttt 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 17732816 - 17732908
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggttttt 207  Q
    ||||||| ||||||||||||||||||| |||||| ||||| ||| | |||||||||| || |||||||||||||||||  | |||||||||||    
T  17732816 tttaacagccaaaacaaacggaggggggtaattggctaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcagggggttttt 17732908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 15348197 - 15348307
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttagggggtttttgacgaat 214  Q
    ||||||| |||||||||||||| |||| |||||||||||| |||  ||||||||||| |  |||||||||||| ||||  | ||||| |||||||||||     
T  15348197 tttaacagccaaaacaaacggaagggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggatttttgacgaaa 15348296  T
Q  215 cctacaatttc 225  Q
     ||||||||||    
T  15348297 gctacaatttc 15348307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 6009428 - 6009505
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| | ||||||||||  | |||||||||||||||||    
T  6009428 tttaacagccaaaacaaacggagagggataattgactaacgtttgataatttcaggggagtttttgaagtttcttaaa 6009505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 15347567 - 15347468
Alignment:
Q  116 ttaacaaccaaaacaaacgga-gggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||| | |||||||||| || |||||||||||||||||  | | ||||||||||||||||    
T  15347567 ttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaa 15347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 6008776 - 6008665
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttaggg-ggtttttgacgaa 213  Q
    ||||||| |||||||||| |||||||| | |||||||||| |||  ||||||||||| |  |||||||||||| ||||  | |||| |||||||||||||    
T  6008776 tttaacagccaaaacaaatggaggggggtgattgactaacgtttgtcaatttcagggggctttttgaagtttcctaaaaatcagggaggtttttgacgaa 6008677  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  6008676 agctacaatttc 6008665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 17732150 - 17732039
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttaggggg-tttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  ||||||||||| |  ||||||| |||  ||||  | |||||| |||||||||||    
T  17732150 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaaattttctaaaaatcagggggatttttgacgaa 17732051  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  17732050 aactacaatttc 17732039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 30710279 - 30710389
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||| || |||| |||||||||||| |||  ||||||||||| || |||||||||||| ||||  | | ||||||||||||||||    
T  30710279 tttaacagccaaaacaaacagatgggggtaattgactaacgtttggcaatttcaggg-ggtttttgaagtttcctaaaaatcaggggggtttttgacgaa 30710377  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  30710378 agctacaatttc 30710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 5348506 - 5348617
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||  ||||||||||| |  |||||||||||| ||||  | | ||||||||||||||||    
T  5348506 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaa 5348605  T
Q  214 tcctacaatttc 225  Q
      ||||||||||    
T  5348606 agctacaatttc 5348617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 31808412 - 31808335
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||   | |||||||||||||||||    
T  31808412 tttaacagccaaaacaaactgaggggggtaattgactaacgtttaacaatttcaggagagtttttgaagtttcttaaa 31808335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 33136550 - 33136659
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggt 176  Q
    |||| ||||| |||||| |||  ||||||||||||  || ||||| |||||||| | |||||||| |||||||||||| ||||||||||||||||  | |    
T  33136550 gaggggccacgtgtacagttaactgccacgtcatagagtgtaacagccaaaacagatggaggggggtaattgactaacgtttaacaatttcaggggagtt 33136649  T
Q  177 tttgaagttt 186  Q
    ||||||||||    
T  33136650 tttgaagttt 33136659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 5347858 - 5347759
Alignment:
Q  116 ttaacaaccaaaacaaacgga-gggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta-gggggtttttgacgaa 213  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||| | |||||||||| || |||||||||||||||||  | | ||||||||||||||||    
T  5347858 ttaacagccaaaacaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaa 5347759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 21012396 - 21012490
Alignment:
Q  100 tgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgt 195  Q
    |||||| ||||||||| ||| | ||||||||||| ||||||| ||||||| |||| ||| ||||||||| |  |||||||||||||||||||||||    
T  21012396 tgccacatcatatggtgtaatagccaaaacaaacagaggggg-taattgattaacgtttgacaatttcaagtggggttttgaagtttcttaaatgt 21012490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 36429417 - 36429318
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgttaggggg-tttttgacgaa 213  Q
    ||||||| ||||||||||||||||||| ||||||||| || ||| | ||||||||||  | |||||||||||||||||  | |||||| |||||||||||    
T  36429417 tttaacagccaaaacaaacggaggggggtaattgactgacgtttgataatttcaggggcgtttttgaagtttcttaaaaatcagggggatttttgacgaa 36429318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 7493209 - 7493287
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttca-gggagggttttgaagtttcttaaa 192  Q
    ||||||||||||||||||| ||||  ||||||||||||| |||| ||||||| | |||||| ||||||| |||||||||    
T  7493209 tttaacaaccaaaacaaacagaggaagataattgactaatatttgacaattttatgggaggtttttgaaatttcttaaa 7493287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 25215448 - 25215537
Alignment:
Q  78 aggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttca 168  Q
    |||||||||||||||  |||  || ||||||||||||| ||||||  |||||||||||| ||||||||  ||||||||||| |||||||||    
T  25215448 aggtgccacatgtacggttaactgtcacgtcatatggtgtaacaataaaaacaaacgga-ggggataaccgactaacatttgacaatttca 25215537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 25279599 - 25279688
Alignment:
Q  78 aggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttca 168  Q
    |||||||||||||||  |||  || ||||||||||||| ||||||  |||||||||||| ||||||||  ||||||||||| |||||||||    
T  25279599 aggtgccacatgtacggttaactgtcacgtcatatggtgtaacaataaaaacaaacgga-ggggataaccgactaacatttgacaatttca 25279688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 29500705 - 29500804
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaatgtta--gggggtttttgacga 212  Q
    |||||||||||||||||||||||  || |||||||||||| ||| ||||||||| |||   ||||||| ||||||||| ||||  ||| |||||||||||    
T  29500705 tttaacaaccaaaacaaacggagaagg-taattgactaacgtttgacaatttcaaggatttttttgaactttcttaaaagttatggggagtttttgacga 29500803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 7491386 - 7491330
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcaggg 171  Q
    ||||||| |||||||||||| |||||| |||||||||||| ||| ||||||||||||    
T  7491386 tttaacagccaaaacaaacgaaggggggtaattgactaacgtttcacaatttcaggg 7491330  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 27915015 - 27915149
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggt 176  Q
    ||||||||||||||||| |||  |  |||||||||  |||||||| |||||  |||   |||||| |||||||||||||||| ||||||| | |||   |    
T  27915015 gaggtgccacatgtacagttaactaacacgtcataaagtttaacagccaaagtaaataaaggggg-taattgactaacatttgacaatttaatggatttt 27915113  T
Q  177 tttgaagtttcttaaatgttagggggtttttgacgaa 213  Q
    ||||||||||||||||||| | ||| |||||||||||    
T  27915114 tttgaagtttcttaaatgtca-gggttttttgacgaa 27915149  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 36430066 - 36430132
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttga 181  Q
    ||||||| |||||||||||||| |||| |||||||||||| |||  ||||||||||| || ||||||    
T  36430066 tttaacagccaaaacaaacggatgggggtaattgactaacgtttggcaatttcaggggggtttttga 36430132  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 36681851 - 36681926
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggttttgaagtttcttaaa 192  Q
    |||||||  |||||||||||||||||| |||||||||||| ||| ||||||||| |  ||| |||||||||| |||||    
T  36681851 tttaacagtcaaaacaaacggaggggggtaattgactaacgtttgacaatttcatg--ggggtttgaagttttttaaa 36681926  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 10326808 - 10326897
Alignment:
Q  79 ggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttca 168  Q
    |||||||| ||| ||||||  ||||||||||||  | |||||| |||||||| |||||||||| || ||||||||  ||| |||||||||    
T  10326808 ggtgccacgtgtgcatttaactgccacgtcatagaggttaacagccaaaacagacggaggggggtagttgactaatgtttgacaatttca 10326897  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 29500136 - 29500051
Alignment:
Q  123 ccaaaacaaacggagggggataattgactaacatttaacaatttca-gggagggttttgaagtttcttaaatgttagggggttttt 207  Q
    ||||||||||||||| ||| |||||||||||| ||| ||||||| | | |||| || ||||||||||||||  |||||||| ||||    
T  29500136 ccaaaacaaacggagaggggtaattgactaacgtttgacaattttatgagaggtttatgaagtttcttaaaaattagggggatttt 29500051  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 27597423 - 27597467
Alignment:
Q  125 aaaacaaacggagggggataattgactaacatttaacaatttcag 169  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||||    
T  27597423 aaaacaaacggaggggagtaattgactagcatttgacaatttcag 27597467  T

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Target: scaffold0380 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 7502 - 7615
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggt 176  Q
    |||||||||||||||   |||  ||||| |||||| || |||||||| ||||||||||||||||| ||||| | |||||||| ||||||||  |||||||    
T  7502 gaggtgccacatgtattgttaactgccaagtcataggggttaacaacaaaaacaaacggaggggg-taattaattaacatttgacaatttcgcggagggt 7600  T
Q  177 tttgaagtttcttaa 191  Q
    ||||| |||||||||    
T  7601 tttgatgtttcttaa 7615  T

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Target: scaffold0102 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 33144 - 33256
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcagggagggtttt-gaagtttcttaaatgttagggg-gtttttgacga 212  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||| || |||| |||||||| ||||  | ||||| |||||| ||||    
T  33144 tttaacagccaaaacaaacggaggggggtaattgactaacgtttgacaatttcaggggggtttttggaagtttcctaaaaatcaggggagttttttacga 33243  T
Q  213 atcctacaatttc 225  Q
    |  ||||||||||    
T  33244 aagctacaatttc 33256  T

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Target: scaffold0102; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 32487 - 32409
Alignment:
Q  115 tttaacaaccaaaacaaacggagggggataattgactaacatttaacaatttcag-ggagggttttgaagtttcttaaa 192  Q
    ||||||| ||||||||||||||| ||| | |||||||||| ||| | |||||| | || || |||||||||||||||||    
T  32487 tttaacagccaaaacaaacggagaggggttattgactaacgtttgataatttccgagggggtttttgaagtttcttaaa 32409  T

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