View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_45 (Length: 328)
Name: NF17576_low_45
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_45 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 115712 - 116011
Alignment:
| Q |
18 |
gcttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
115712 |
gcttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgctggatacttttacttacacaaagt |
115811 |
T |
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| Q |
118 |
tgagttattatataatcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115812 |
tgagttattatataatcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaatt |
115911 |
T |
|
| Q |
218 |
gctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115912 |
gctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttctt |
116011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 178075 - 177779
Alignment:
| Q |
18 |
gcttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagt |
117 |
Q |
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| T |
178075 |
gcttggaacaactgtgtcatatagtttttccaacacataaattggaatctgattctcaagaagcaacaagtcatgctgaatatttttacttaaacaaagt |
177976 |
T |
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| Q |
118 |
tgagttattatataatcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaatt |
217 |
Q |
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| T |
177975 |
tgagttactatataatcatctttgtgttcccattttttagcttctcttaaaaacagctccatgatgaacacaacatccaacaatatcatgtcaacaaatt |
177876 |
T |
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| Q |
218 |
gctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
314 |
Q |
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| T |
177875 |
gttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttctaggaaagctttgtagttaattaaatcattttt |
177779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 606765 - 606565
Alignment:
| Q |
18 |
gcttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagt |
117 |
Q |
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||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
606765 |
gcttggaacaaccgtgtcatataatttttctaacacatagattggaagctgattctcaagaagcaacaaatcccgttggatacttttgcttacacaatgt |
606666 |
T |
|
| Q |
118 |
tgagttattatataatcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaatt |
217 |
Q |
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| T |
606665 |
tgagttactatgtaatcatctttgtgttcccatctttttttctctctaagaaacaactccatgatgaacacagcatccaatagtatcatatcaacaaatt |
606566 |
T |
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| Q |
218 |
g |
218 |
Q |
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| T |
606565 |
g |
606565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 10106 - 10400
Alignment:
| Q |
20 |
ttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttg |
119 |
Q |
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||||||||| |||| |||| ||||| ||||| ||||| |||||||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||||||| |
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| T |
10106 |
ttggaacaactgtgccatagagtttctccaagacatacattggaagttgattctcaataagcaacaaatccctttgaatacttctactcacacaaagttg |
10205 |
T |
|
| Q |
120 |
agttattatataatcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgc |
219 |
Q |
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|||||| ||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||||| ||| |
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| T |
10206 |
agttataatataatcatctttgtgttcccattttttgttttctcttaaaaataactccatgatgaagacagaatccaacagtatcatatcaaccatttgt |
10305 |
T |
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| Q |
220 |
tcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
314 |
Q |
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| T |
10306 |
tcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaaattctttgtagttcatcaaatcattttt |
10400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 23560 - 23854
Alignment:
| Q |
20 |
ttggaacaattgtgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagttg |
119 |
Q |
| |
|
||||||||| |||| |||| ||||| ||||| ||||| |||||||| |||||||||| |||||||||||||| ||| |||||| |||| ||||||||||| |
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| T |
23560 |
ttggaacaactgtgccatagagtttctccaagacatacattggaagttgattctcaataagcaacaaatccctttgaatacttctactcacacaaagttg |
23659 |
T |
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| Q |
120 |
agttattatataatcatctttgtgctcccattttttattttctcttagaaacaactccatgatgaacacagaatccaatagtatcatgtcaaccaattgc |
219 |
Q |
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| T |
23660 |
agttataatataatcatctttgtgttcccattttttgttttctcttaaaaataactccatgatgaagacagaatccaacagtatcatatcaaccatttgt |
23759 |
T |
|
| Q |
220 |
tcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
314 |
Q |
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||| || ||||||| ||| ||||||||||||||||||||||| || || |||||||||||||| || ||||||||||||| |||||| |||| |
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| T |
23760 |
tcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaaattctttgtagttcatcaaatcattttt |
23854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 314
Target Start/End: Original strand, 37438352 - 37438640
Alignment:
| Q |
32 |
tgtcatatagtttttccaacacataaattggaagctgattctcaagaagcaacaaatcccgttggatacttttacttacacaaagtt-gagttattatat |
130 |
Q |
| |
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|||||||||||||| |||||| | |||||||||| ||||| | |||| |||||| || |||||| | |||||||||| ||| ||| | | || || || |
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| T |
37438352 |
tgtcatatagttttaccaacaaaaaaattggaagttgattttagagaaacaacaagtcatgttggacaattttacttactcaatgtttgggatactaaat |
37438451 |
T |
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| Q |
131 |
aatcatctttgtgctcccattttttattttctcttagaaa-caactccatgatgaacacagaatccaatagtatcatgtcaacc----aattgctcactg |
225 |
Q |
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|||||||||| || ||| |||| ||| |||||||| ||| |||| ||||||||||||| |||||| |||||||| | | ||||| | | || |
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| T |
37438452 |
aatcatctttttgttcctatttattagcttctcttaaaaaacaacatcatgatgaacacaacatccaacagtatcatatatatacataaattgtttattg |
37438551 |
T |
|
| Q |
226 |
ttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcactttt |
314 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||| |||||||||||||||| || ||| |||| ||||||| ||||||||||| |
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| T |
37438552 |
ctgatatttgagaatttcttttggtaacatcggcgtatattttgctcttcttgttcaacgaaggttttgcagttcattaaatcactttt |
37438640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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