View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_49 (Length: 289)
Name: NF17576_low_49
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 31646975 - 31646695
Alignment:
| Q |
1 |
ctctaaagatatgagtcactgtgaaattcatactcttagtcttctctaaaaacttcatatcacttaaatcctaatggatatgataatatttttatactta |
100 |
Q |
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||||||||||||||||||| ||||||||||| |||||||| | |||||| |||||||||||||||| ||||||||||| |||||| ||||||||||| |
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| T |
31646975 |
ctctaaagatatgagtcaccgtgaaattcatgttcttagtcacttttaaaaaattcatatcacttaaattctaatggatataataatacttttatactta |
31646876 |
T |
|
| Q |
101 |
ctttcgatactacgccatatttttaacaagacagttgtaaataatattatgtttccttgagttttggcctagtcctttaaaacaannnnnnnnnnnnnnn |
200 |
Q |
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|||| |||| ||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
31646875 |
cttttgatattacgccagatttttaacaagatagttgtcaataatattatgttcccttgagttttggcttagtcctttaaaacaa-tttttctttcttta |
31646777 |
T |
|
| Q |
201 |
nnnnnnnataatatatt---ccctttgagtagtgttgtagatgaatgtgaaaagttgttgttgcagcctaacttatcctttg |
279 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31646776 |
atttttgataatatattattccctttgagtagtgttgtagatgaatgtgaaaagttgttgttgcagcctaacttatcttttg |
31646695 |
T |
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