View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_50 (Length: 287)
Name: NF17576_low_50
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 30768150 - 30768406
Alignment:
| Q |
19 |
tcttaaaagatgaaaactgtaaccattagattctgatgtttctccaacaaccattccacttgagtttgcaactacattctgaacttcttctagaggtttc |
118 |
Q |
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| T |
30768150 |
tcttaaaagatgaaaactgtaaccattagattctgatgtttctccaacaaccattccacttgagtttgcaactacattctgaacttcttctagaggtttc |
30768249 |
T |
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| Q |
119 |
agagtttgattttcgccgattggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttg |
218 |
Q |
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| T |
30768250 |
agagtttgattttcgctgattggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttg |
30768349 |
T |
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| Q |
219 |
gtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtctgtgctg |
275 |
Q |
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| T |
30768350 |
gtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctg |
30768406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 39077242 - 39077380
Alignment:
| Q |
137 |
attggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggc |
236 |
Q |
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| T |
39077242 |
attggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagac |
39077341 |
T |
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| Q |
237 |
gatcttgaacatcgtagaattcgatggctgtctgtgctg |
275 |
Q |
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| T |
39077342 |
ggtcttgaacatcatagaattgaattgctgtgtgtgctg |
39077380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 22328097 - 22328025
Alignment:
| Q |
185 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaatt |
257 |
Q |
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| T |
22328097 |
gcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaatt |
22328025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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