View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17576_low_51 (Length: 286)

Name: NF17576_low_51
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17576_low_51
NF17576_low_51
[»] chr4 (2 HSPs)
chr4 (9-258)||(223768-224017)
chr4 (76-136)||(37905044-37905104)
[»] chr7 (2 HSPs)
chr7 (77-128)||(22803133-22803185)
chr7 (77-128)||(22869628-22869680)
[»] chr3 (1 HSPs)
chr3 (77-127)||(3666987-3667037)
[»] scaffold0227 (1 HSPs)
scaffold0227 (156-255)||(1749-1848)
[»] chr1 (3 HSPs)
chr1 (106-140)||(50751955-50751989)
chr1 (87-128)||(38450418-38450459)
chr1 (87-128)||(38464269-38464310)
[»] chr6 (1 HSPs)
chr6 (77-128)||(20868217-20868269)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 223768 - 224017
Alignment:
Q  9 gaagaatatggatttcccaaccttgttggacaagtggattatggagtgcattagtacggctccgacctctcatttggtaatcaatcaacatttcaagaat 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223768 gaagaaaatggatttcccaaccttgttggacaagtggattatggagtgcattagtacggctccgacctctcatttggtaatcaatcaacatttcaagaat 223867  T
Q  109 tatcttcttctctctaaaactcttgttcaatactatatttgcataacttctcctttgtatcggattctattctaaattttttaaatctcaacacttagac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  223868 tatcttcttctctctaaaactcttgttcaatactatatttgcataacttctcctttgtatcggattctattctaaatttttaaaatctcaacacttagac 223967  T
Q  209 ttgaatttatcggtttgtctctaaaatcctatttttccgtctcacatagg 258  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  223968 ttgaatttatcggtttgtccctaaaatcctatttttccgtctcacatagg 224017  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 37905044 - 37905104
Alignment:
Q  76 tctcatttggtaatcaatcaacatttcaagaattatcttcttctctctaaaactcttgttc 136  Q
    ||||||||||||||||||||| |||| || ||||||||| |||||||||||||||| ||||    
T  37905044 tctcatttggtaatcaatcaatattttaacaattatcttattctctctaaaactctcgttc 37905104  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 22803133 - 22803185
Alignment:
Q  77 ctcatttggtaatcaatcaac-atttcaagaattatcttcttctctctaaaac 128  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  22803133 ctcatttggtaatcaatcaaatatttcaacaattatcttcttctctctaaaac 22803185  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 22869628 - 22869680
Alignment:
Q  77 ctcatttggtaatcaatcaac-atttcaagaattatcttcttctctctaaaac 128  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  22869628 ctcatttggtaatcaatcaaatatttcaacaattatcttcttctctctaaaac 22869680  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 3666987 - 3667037
Alignment:
Q  77 ctcatttggtaatcaatcaacatttcaagaattatcttcttctctctaaaa 127  Q
    ||||||||| |||||||||| ||||||| ||||||||||| ||||||||||    
T  3666987 ctcatttgggaatcaatcaatatttcaacaattatcttctcctctctaaaa 3667037  T

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Target: scaffold0227 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 1749 - 1848
Alignment:
Q  156 ttctcctttgtatcggattctattctaaattttttaaatctcaacactt-agacttgaatttatcggtttgtctctaaaatcctatttttccgtctcaca 254  Q
    ||||||||||||||||||||||||| ||||  ||  |||| | |||||| ||||||| | |||||||||  ||||||||||| |||| ||||| ||||||    
T  1749 ttctcctttgtatcggattctattccaaatcattagaatccctacacttgagacttgga-ttatcggttcatctctaaaatcatattcttccgactcaca 1847  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 50751955 - 50751989
Alignment:
Q  106 aattatcttcttctctctaaaactcttgttcaata 140  Q
    ||||||||||||||||||||||| |||||||||||    
T  50751955 aattatcttcttctctctaaaacccttgttcaata 50751989  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 38450418 - 38450459
Alignment:
Q  87 aatcaatcaacatttcaagaattatcttcttctctctaaaac 128  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  38450418 aatcaatcaatatttcaacaattatcttattctctctaaaac 38450459  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 38464269 - 38464310
Alignment:
Q  87 aatcaatcaacatttcaagaattatcttcttctctctaaaac 128  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  38464269 aatcaatcaatatttcaacaattatcttattctctctaaaac 38464310  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 20868217 - 20868269
Alignment:
Q  77 ctcatttggtaatcaatcaa-catttcaagaattatcttcttctctctaaaac 128  Q
    ||||||||  |||||||||| ||||| || |||||||||||||||||||||||    
T  20868217 ctcatttgacaatcaatcaaacattttaacaattatcttcttctctctaaaac 20868269  T

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