View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_52 (Length: 285)
Name: NF17576_low_52
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 41614511 - 41614680
Alignment:
| Q |
15 |
tattctggtaatttcaaatattcttttttgagggaaattttaaatattcttctattttagtactattgaatatacatttcaactagtattactttatttc |
114 |
Q |
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| T |
41614511 |
tattctggtaattttaaatattcttttttgagggaaattttaaatattcttctattttagtactattgaatatacatttcaactaatattactttatttc |
41614610 |
T |
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| Q |
115 |
gctagacacaacctttgttggtcaaagaatacttgtttatgaccttcaaaacaaacaaatgtatattcca |
184 |
Q |
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| T |
41614611 |
gttagacacaacctttgttggtcaaagaatatttgtttatgaccttcaaaacaaacaaatgtatattcca |
41614680 |
T |
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Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 41614818 - 41614903
Alignment:
| Q |
182 |
ccacattgaaaaaatagcattaaagtgaagatataaataaagaattgtgtgtcaattctttgataaattgtttaactagtagttga |
267 |
Q |
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| T |
41614818 |
ccacattgaaaaaatagcattaaagtgaagatataaataaagaattgtgtgtcaattctttgataaattgtttaagtagtagttga |
41614903 |
T |
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