View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_54 (Length: 281)
Name: NF17576_low_54
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 26267752 - 26267552
Alignment:
| Q |
18 |
aaaatattctttaaatttttattctttaaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaacatgcaggttagggctcctatgta |
117 |
Q |
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| T |
26267752 |
aaaatattctttaaacttttcttctttaaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaacatgcaag-----gctcctatgta |
26267658 |
T |
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| Q |
118 |
tgatattctaaaaggaagggaggatggaaggtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactcataaggattttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26267657 |
tgatattctaaaaggaagggaggatggaaggtcaaaacttgaagatactttcaatctccaagccccaatattaaatgcttctcaactcataaggattttt |
26267558 |
T |
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| Q |
218 |
gggcaa |
223 |
Q |
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|||||| |
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| T |
26267557 |
gggcaa |
26267552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 26264516 - 26264331
Alignment:
| Q |
44 |
taaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaacatg--caggttagggctcctatgtatgatattctaaaaggaaggga-gg |
140 |
Q |
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|||||| |||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| | || |
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| T |
26264516 |
taaaatattctttaaacttttcatattttcctaacaattgtgttttgtaacatgtgcaggttagggctcccatgtatgatatttcaaaaggaaggaaagg |
26264417 |
T |
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| Q |
141 |
atggaag---gtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactcataaggatttttgggcaa |
223 |
Q |
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| T |
26264416 |
gtggaagaaggacaaaacttgaagatactttcaatctctgagtcccaacattcaatgcttctcaactcataaggatttttgggcaa |
26264331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 26265079 - 26264967
Alignment:
| Q |
110 |
cctatgtatgatattctaaaaggaagggaggatggaag---gtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactca |
206 |
Q |
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| T |
26265079 |
cctatgtataatattctaaaaggaagggaggatggaagaaggtcaaaacttgaagatactttcaatctccaagcccgaacattaaatgcttctcaactca |
26264980 |
T |
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| Q |
207 |
taaggatttttgg |
219 |
Q |
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||||||||||||| |
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| T |
26264979 |
taaggatttttgg |
26264967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 26267206 - 26267167
Alignment:
| Q |
225 |
ctacaaactaaactaaagtaaactaaattgtgtcaccaca |
264 |
Q |
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| T |
26267206 |
ctacaaactaaactaaagtaaactaaattgtgtcaccaca |
26267167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 23574592 - 23574800
Alignment:
| Q |
18 |
aaaatattctttaaatttttattctttaaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaaca--tgcaggttagggctcctatg |
115 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| |||||||||| | |||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
23574592 |
aaaatattctttaaacttttcttctttaaaatcttctttaaacttttcatatttcactaacaattgtgttttgtaacatgtgcaggttagggttcctatg |
23574691 |
T |
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| Q |
116 |
tatgatattctaaaaggaagggaggatgg---aaggtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactcataagga |
212 |
Q |
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||||||||| ||| |||||| ||||| | ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
23574692 |
tatgatatttcaaagggaaggaaggatagaaaaaggtcaaaacttgaagatacattcaatctccaagccccaacatt-aatgcttctcaactcttaagga |
23574790 |
T |
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| Q |
213 |
tttttgggca |
222 |
Q |
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|||||||||| |
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| T |
23574791 |
tttttgggca |
23574800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 23583374 - 23583425
Alignment:
| Q |
170 |
aatctccaagccccaacattaaatgcttctcaactcataaggatttttgggca |
222 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
23583374 |
aatctccaagccccaacattaa-tgcttctcaactcttaaggatttttgggca |
23583425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 23598197 - 23598248
Alignment:
| Q |
170 |
aatctccaagccccaacattaaatgcttctcaactcataaggatttttgggca |
222 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
23598197 |
aatctccaagccccaacattaa-tgcttctcaactcttaaggatttttgggca |
23598248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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