View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_58 (Length: 253)
Name: NF17576_low_58
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 33973306 - 33973536
Alignment:
| Q |
4 |
aatagttgaaacagcacgaaagaaccaaagtgcaaggctattgttgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaat |
103 |
Q |
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| T |
33973306 |
aatagttgaaacagcacgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaat |
33973405 |
T |
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| Q |
104 |
gaacacttggatcaacccagagaagaaataaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaacc |
203 |
Q |
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| T |
33973406 |
gaacacttggatcaacccagagaagaaataaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaacc |
33973505 |
T |
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| Q |
204 |
aatctcttattgtaaaggatgtcgaagagac |
234 |
Q |
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| T |
33973506 |
aatctcttattgtaaatgatgtcgaagagac |
33973536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 33990118 - 33990363
Alignment:
| Q |
4 |
aatagttgaaacagcacgaaagaaccaaagtgcaaggctattgttgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaat |
103 |
Q |
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| T |
33990118 |
aatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaat |
33990217 |
T |
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| Q |
104 |
gaacacttggatcaacccagagaagaaataaatagt-------------ttgat--agaagaaagtgcatgcaaatcttcttttgagaatgattcctacg |
188 |
Q |
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| T |
33990218 |
gaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg |
33990317 |
T |
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| Q |
189 |
ttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagac |
234 |
Q |
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| T |
33990318 |
ttgttgatgagaaccaatctcttattgtaaatgatgttgaagagac |
33990363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 33950654 - 33950790
Alignment:
| Q |
16 |
agcacgaaagaaccaaagtgcaaggctattgttgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggat |
115 |
Q |
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| T |
33950654 |
agcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggat |
33950753 |
T |
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| Q |
116 |
caacccagagaagaaataaatagtttgatagaagaaa |
152 |
Q |
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| T |
33950754 |
caccccagagaagaaataaatagtctgatagaagaaa |
33950790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 61 - 231
Target Start/End: Original strand, 33959346 - 33959531
Alignment:
| Q |
61 |
aaaggatttatctcccgttgtacaagatataaagcattacaatgaacacttggatcaacccagagaagaaataaatagtttgatagaagaa--------- |
151 |
Q |
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||||||||||||||| || || ||||| |||||||| |||||||| || |||||||| |||||||| |||||||||||| | ||||||||| |
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| T |
33959346 |
aaaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgca |
33959445 |
T |
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| Q |
152 |
------agtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaaga |
231 |
Q |
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| T |
33959446 |
ggagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaaga |
33959531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 33950847 - 33950893
Alignment:
| Q |
188 |
gttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagac |
234 |
Q |
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| T |
33950847 |
gttgttgaggagaaccaatctcttactgtaaatgatgttgaagagac |
33950893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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