View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_67 (Length: 236)
Name: NF17576_low_67
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 1624256 - 1624046
Alignment:
| Q |
10 |
attatactggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatt |
109 |
Q |
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| T |
1624256 |
attatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaat |
1624157 |
T |
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| Q |
110 |
tatatttcatttcctgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcgaactaacaacgaaagatagagactggaaaaa |
209 |
Q |
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| T |
1624156 |
tatatttcatttcctgttttatgttcttgttataagaga-aaaacaatattcactgcttgaaaaagtcgaactaacaacgaaagatagagactggaaaaa |
1624058 |
T |
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| Q |
210 |
taaaatcaatct |
221 |
Q |
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|||||||||||| |
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| T |
1624057 |
taaaatcaatct |
1624046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 1607235 - 1607056
Alignment:
| Q |
10 |
attatactggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatt |
109 |
Q |
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| T |
1607235 |
attatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaat |
1607136 |
T |
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| Q |
110 |
tatatttcatttcctgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcgaactaacaacga |
190 |
Q |
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| T |
1607135 |
tatatttcatttcctgttttatgttcttgttataagaga-aaaacaatattcactgctagaaaaagtttaactaacaacga |
1607056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 1630231 - 1630117
Alignment:
| Q |
10 |
attatactggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatt |
109 |
Q |
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| T |
1630231 |
attatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgagt |
1630132 |
T |
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| Q |
110 |
tatatttcatttcct |
124 |
Q |
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|||||| ||| |||| |
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| T |
1630131 |
tatattccatctcct |
1630117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 10820055 - 10820153
Alignment:
| Q |
17 |
tggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatttatatt |
115 |
Q |
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| T |
10820055 |
tggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagccggtgagttatatt |
10820153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 18785275 - 18785103
Alignment:
| Q |
17 |
tggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacagcaggtgatttatattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |
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| T |
18785275 |
tggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacagcaggtgaattataatt |
18785176 |
T |
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| Q |
117 |
catttcctgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcgaactaacaacga |
190 |
Q |
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| T |
18785175 |
catttcctgttttgtgttcttgttataagaga-aaaacaatattcactgctagaaaaagtttaactaacaacga |
18785103 |
T |
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