View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_7 (Length: 541)
Name: NF17576_low_7
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 98 - 523
Target Start/End: Complemental strand, 15924801 - 15924376
Alignment:
| Q |
98 |
ttcataaaattaaaatggtagacttggataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
197 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15924801 |
ttcataaaattaaaatgttagacttgcataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
15924702 |
T |
|
| Q |
198 |
tttatcattcttccattgttaccatcatcatcttctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15924701 |
tttatcattcttccattgttaccatcatcatcttctggacctggaaaaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcgccctaa |
15924602 |
T |
|
| Q |
298 |
taggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacnnnnnnntcatcttttccatc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15924601 |
taggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacaaaaaaatcatcttttccatc |
15924502 |
T |
|
| Q |
398 |
acctttctccaccaacttttccaatgcataattctcattaannnnnnnctcactaatcagattcattaaatctaatatattatattcctccgggcgcaaa |
497 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15924501 |
acctttctccaccaatttttccaatgcataattctcattaatttttttctcaccaatcagattcattaaatctaatatattatattcctccgggcgcaaa |
15924402 |
T |
|
| Q |
498 |
tttgtttcgattttgctcaacaatat |
523 |
Q |
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|||||||||||||||||||||||||| |
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| T |
15924401 |
tttgtttcgattttgctcaacaatat |
15924376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 131 - 373
Target Start/End: Complemental strand, 13116586 - 13116344
Alignment:
| Q |
131 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
230 |
Q |
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|||||| ||| |||||| | | || ||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| |||| |
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| T |
13116586 |
ttgtattcccaattctcctgctagtttacatttcagctggtcaagttcttttcctggcaatgaaactgttatcatccttccattattaccatcagtatct |
13116487 |
T |
|
| Q |
231 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttacaccatata |
330 |
Q |
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||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||| ||| |||| ||||||| |||||||| ||||| | || | |
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| T |
13116486 |
tctggtcctggaagaaccaaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaatctttatctcgtaaa |
13116387 |
T |
|
| Q |
331 |
aatcagcttcttccaagtctacaaatgttaactttgctccata |
373 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
13116386 |
aatcagcctcttccaagtctacaaatgttaacttagctccata |
13116344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 131 - 433
Target Start/End: Complemental strand, 46011718 - 46011416
Alignment:
| Q |
131 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
230 |
Q |
| |
|
||||||| |||||||| | | || ||| ||||||| ||||||||||||||||| || || |||| | ||| ||| |||||||| ||||||| | |||| |
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| T |
46011718 |
ttgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatct |
46011619 |
T |
|
| Q |
231 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttacaccatata |
330 |
Q |
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||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||| || ||| ||||||| ||||||| |||||||||||| | |
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| T |
46011618 |
tctggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaa |
46011519 |
T |
|
| Q |
331 |
aatcagcttcttccaagtctacaaatgttaactttgctccatatacnnnnnnntcatcttttccatcacctttctccaccaacttttccaatgcataatt |
430 |
Q |
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||| | |||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||| ||||| || ||||||||| ||| ||| |
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| T |
46011518 |
aattaccttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatccatgatt |
46011419 |
T |
|
| Q |
431 |
ctc |
433 |
Q |
| |
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||| |
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|
| T |
46011418 |
ctc |
46011416 |
T |
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