View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_73 (Length: 216)
Name: NF17576_low_73
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 59 - 199
Target Start/End: Original strand, 39620172 - 39620312
Alignment:
| Q |
59 |
atgttgggcatatatggacttggaggaatagggaagacagaacttgccacatcattgtataacaagatcgtgcaccattatgaagctgcaagttttcttg |
158 |
Q |
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| T |
39620172 |
atgttgggtatacatggacttggtggaatagggaaaacagaacttgccaaatcattgtataacaaaattgtgcaccaatttgaagctgcaagttttcttg |
39620271 |
T |
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| Q |
159 |
ccaatgttagagacaaatcgaacaaaatcaatggcctagaa |
199 |
Q |
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| T |
39620272 |
ccaacgttagagagaaatcaaacaaaatcaatggcctagaa |
39620312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 39581798 - 39581647
Alignment:
| Q |
48 |
acactgtatgcatgttgggcatatatggacttggaggaatagggaagacagaacttgccacatcattgtataacaagatcgtgcaccattatgaagctgc |
147 |
Q |
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| T |
39581798 |
acactatatgtatgttgggtatatgcggactcggtggaataggaaaaacagaacttgccaaagcattgtataacaaaattgtgcaccaatttgaagctgc |
39581699 |
T |
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| Q |
148 |
aagttttcttgccaatgttagagacaaatcgaacaaaatcaatggcctagaa |
199 |
Q |
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| T |
39581698 |
aagttttattgccaatgttagagagaaatcaaacaaaatcaacggcccagaa |
39581647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 39628169 - 39628202
Alignment:
| Q |
23 |
agacaatttgaaacaacttgctcccacactgtat |
56 |
Q |
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| T |
39628169 |
agacaatttgaaacaacttgctcccacactgtat |
39628202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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