View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17576_low_9 (Length: 522)
Name: NF17576_low_9
Description: NF17576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17576_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 522
Target Start/End: Original strand, 11742166 - 11742690
Alignment:
| Q |
10 |
gagagatgaaatgaatatgtatttactagtgatagataattctcaccttctgaattgnnnnnnnaagaattgagttagatctaatccaaattttaagacg |
109 |
Q |
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| T |
11742166 |
gagatatgaaatgaatatgtgtttactaatgatagataattctcaccttatgaattgttttttcaagaattgagttagatctaatccaaattttaagacg |
11742265 |
T |
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| Q |
110 |
atatcaacgc-----cgagatccattatgcctcattttatcgggtctctcgctattaggccactcag----------cactgtagttgtccagtcctaga |
194 |
Q |
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| T |
11742266 |
atatcaacgcatgtccaagatccattatgcctcattttatcgggtctctcgctattagaccactcagtattagttaacagtgtagttgtccaatcctaga |
11742365 |
T |
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| Q |
195 |
agtgagaaggtgtgttaccgatttcaccggatgccacctcttatcaagtctttcgttatcaggccattcagattacactccaactgtctatatgtctata |
294 |
Q |
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| T |
11742366 |
agtgagaaggtgtgttaccggtttcaccggatgccacctcttatcaggtctttcgttatcaggccattcagataacactctacctgtctatgtgtctata |
11742465 |
T |
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| Q |
295 |
agtggtgaatatttcctcattttaaaagcaatatctcatccaatagctcttagagtcggttactatatatatcttagttaaaaattaaatcattaaaagt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| |
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| T |
11742466 |
agtggtgaatatttcctcattttaaaagcaatatctcatccaatagctcttagagtcggttaccatatatatcttaattaaaaattaaatcagtaaaagt |
11742565 |
T |
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| Q |
395 |
ggtcggatatcgattgcaaaaaattcttacagcaagatttatattgcttttatctagtttcattgactaaagaaattagctatactgttttggatctaaa |
494 |
Q |
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| T |
11742566 |
ggtcggat---gattgcaaaaaattctgacagcaagatttatattgcttttatctagtttcattgactaaagaaattagctatactgttttggatctaaa |
11742662 |
T |
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| Q |
495 |
atcataataatatcctattttctgtcga |
522 |
Q |
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| T |
11742663 |
atcataataatatcctatttcctgtcga |
11742690 |
T |
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