View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_10 (Length: 368)
Name: NF17577_high_10
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 28505375 - 28505735
Alignment:
| Q |
9 |
tcgaagaaaatcttagttaacttgaaagagattcgtgtcatctcgtctaaaaagttttttgcttacttagtagcatatttatcttttaatgtcaaaatca |
108 |
Q |
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| T |
28505375 |
tcgaacaaaatcttagttaacttgaaagagattcgtgtcatctcgtctaaaaagttttttgcttacttagtagcatatttatcttttaatgtcaaaatca |
28505474 |
T |
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| Q |
109 |
taaaataaataaaaacggatatggactactaaatttgaaattgaaaacagattgagatcttcttc-atccattcaacatcatatgtatatcttcaacttt |
207 |
Q |
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| T |
28505475 |
taaaataaataaaaacggatatggactactaaatttgaaattgaaaacagattgagatcttcttctttgcattcaacatcatatgtatatcttcaacttt |
28505574 |
T |
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| Q |
208 |
gcattcatccttcttcaacctataaactcagcaataaaatcatctctttaaattcttcaatgtcaaccactcttacgttttaaccttgttgatataaaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
28505575 |
gcattcatccttcttcaacctataaactcagcaataaaatcatctctttaaattctccaatgtccaccactcttaagttttaaccttgttgatataaaat |
28505674 |
T |
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| Q |
308 |
ttcgcagagggcaaatagaaacagacggcaagacctgtgggatgcgggggttcatcatgga |
368 |
Q |
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| T |
28505675 |
tttgaagagggaaaaaagaaacagatggcaagaactgtgggaagtggggtttcttcatgga |
28505735 |
T |
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